Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29732 | 3' | -52.9 | NC_006273.1 | + | 177151 | 0.69 | 0.969264 |
Target: 5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3' miRNA: 3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 188477 | 0.69 | 0.969264 |
Target: 5'- --cGCGCC----UCGGCCUCGgGAGa -3' miRNA: 3'- acaUGCGGcaaaAGCCGGAGUgCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 234315 | 0.69 | 0.969264 |
Target: 5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3' miRNA: 3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 39422 | 0.69 | 0.969264 |
Target: 5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3' miRNA: 3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 37892 | 0.68 | 0.972088 |
Target: 5'- --gGCGCCG-----GGCCUCGCGcAGGu -3' miRNA: 3'- acaUGCGGCaaaagCCGGAGUGC-UCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 105633 | 0.68 | 0.972088 |
Target: 5'- --cACGCuCGggUUCGGuCCUCACGuGu -3' miRNA: 3'- acaUGCG-GCaaAAGCC-GGAGUGCuCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 1739 | 0.68 | 0.972088 |
Target: 5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3' miRNA: 3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 196631 | 0.68 | 0.972088 |
Target: 5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3' miRNA: 3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 141073 | 0.68 | 0.977167 |
Target: 5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3' miRNA: 3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 178069 | 0.68 | 0.977167 |
Target: 5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3' miRNA: 3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 92115 | 0.68 | 0.977167 |
Target: 5'- --aACGCCGUa---GGCCggcUACGGGGa -3' miRNA: 3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 187865 | 0.68 | 0.977167 |
Target: 5'- --cGCGCCGUgggaUCGGCUUCGagauCGAGc -3' miRNA: 3'- acaUGCGGCAaa--AGCCGGAGU----GCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 113674 | 0.68 | 0.979215 |
Target: 5'- cUGUugGCCGUgaccgagagcgUgcgcagCGGCUgggaucccucacgUCGCGAGGa -3' miRNA: 3'- -ACAugCGGCA-----------Aaa----GCCGG-------------AGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 38720 | 0.68 | 0.982322 |
Target: 5'- cGUGCGCCacgccaagauucaccGU--UCGGCCUCGCa--- -3' miRNA: 3'- aCAUGCGG---------------CAaaAGCCGGAGUGcucc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 133907 | 0.68 | 0.983462 |
Target: 5'- --aGCGCCuugucgCGGCC-CAUGAGGu -3' miRNA: 3'- acaUGCGGcaaaa-GCCGGaGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 148696 | 0.67 | 0.986863 |
Target: 5'- cGUGgGCCGgc--CGGCaagCugGAGGu -3' miRNA: 3'- aCAUgCGGCaaaaGCCGga-GugCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 178990 | 0.67 | 0.986863 |
Target: 5'- cGUGCGCaCGgcg-CGGUCcCGCGAuGGa -3' miRNA: 3'- aCAUGCG-GCaaaaGCCGGaGUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 148655 | 0.67 | 0.986863 |
Target: 5'- --gGCGCCGga---GGCCggcCugGAGGu -3' miRNA: 3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 123477 | 0.67 | 0.989698 |
Target: 5'- gUGUAaCGCCGUgugaugcgCGGCUUUACGucGu -3' miRNA: 3'- -ACAU-GCGGCAaaa-----GCCGGAGUGCucC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 159328 | 0.67 | 0.989698 |
Target: 5'- -aUACGUCGUcacCGuCCUCugGAGGa -3' miRNA: 3'- acAUGCGGCAaaaGCcGGAGugCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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