miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 1739 0.68 0.972088
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 18614 0.72 0.90096
Target:  5'- gGUACGUCG---UCGGCCUCGUGGGc -3'
miRNA:   3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 20504 0.67 0.990923
Target:  5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5'
29732 3' -52.9 NC_006273.1 + 33134 0.7 0.95207
Target:  5'- --cGCGCCGccg-CGGCUUCAUGuGGc -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 35407 0.7 0.95207
Target:  5'- uUGUugGCCucg-UCGGCCUCggccacguuccACGAGc -3'
miRNA:   3'- -ACAugCGGcaaaAGCCGGAG-----------UGCUCc -5'
29732 3' -52.9 NC_006273.1 + 37892 0.68 0.972088
Target:  5'- --gGCGCCG-----GGCCUCGCGcAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGAGUGC-UCC- -5'
29732 3' -52.9 NC_006273.1 + 38720 0.68 0.982322
Target:  5'- cGUGCGCCacgccaagauucaccGU--UCGGCCUCGCa--- -3'
miRNA:   3'- aCAUGCGG---------------CAaaAGCCGGAGUGcucc -5'
29732 3' -52.9 NC_006273.1 + 39422 0.69 0.969264
Target:  5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3'
miRNA:   3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 41253 0.66 0.993923
Target:  5'- cGUGgaGUCGa---CGGCCUC-CGAGGg -3'
miRNA:   3'- aCAUg-CGGCaaaaGCCGGAGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 50339 0.66 0.993923
Target:  5'- --gGCGCCGgugUUGGUCgC-CGAGGg -3'
miRNA:   3'- acaUGCGGCaaaAGCCGGaGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 68188 0.66 0.993028
Target:  5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3'
miRNA:   3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 68546 0.7 0.934371
Target:  5'- gGUGCGCUGgaugcUGGCUuuUCugGAGGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGG--AGugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 76094 0.7 0.95207
Target:  5'- aUGUGgGCCGgcacCGGCgUCAUGAGc -3'
miRNA:   3'- -ACAUgCGGCaaaaGCCGgAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 76533 0.7 0.939137
Target:  5'- cGU-CGCCGc--UCGGCgCggcgCACGAGGa -3'
miRNA:   3'- aCAuGCGGCaaaAGCCG-Ga---GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 79582 0.66 0.993028
Target:  5'- cGUgACGCUGUauacgUCGGCagggucCACGGGGu -3'
miRNA:   3'- aCA-UGCGGCAaa---AGCCGga----GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 83012 0.67 0.990923
Target:  5'- --cACGCCGg---UGGCacaccugCACGAGGa -3'
miRNA:   3'- acaUGCGGCaaaaGCCGga-----GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 89586 0.71 0.918696
Target:  5'- gGgcCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- aCauGCGGCAaaaGCCGGAGUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 92115 0.68 0.977167
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 99840 0.66 0.995437
Target:  5'- aUGUugACGUCGUccagugCGGCCUCcuCGAuGGg -3'
miRNA:   3'- -ACA--UGCGGCAaaa---GCCGGAGu-GCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 105170 0.66 0.995437
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.