miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 163844 0.72 0.888013
Target:  5'- aGU-CGCCGgcagCGGCCgccgGCGAGGg -3'
miRNA:   3'- aCAuGCGGCaaaaGCCGGag--UGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 167667 0.66 0.992031
Target:  5'- --aACGgCGgggUCGGCCgccguucgucgUCACGGGGc -3'
miRNA:   3'- acaUGCgGCaaaAGCCGG-----------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 173359 0.67 0.990203
Target:  5'- gGUGcCGCCGcucugUUCGGCuauuacggucuggauCUCGCGcAGGg -3'
miRNA:   3'- aCAU-GCGGCaa---AAGCCG---------------GAGUGC-UCC- -5'
29732 3' -52.9 NC_006273.1 + 175605 0.7 0.939137
Target:  5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3'
miRNA:   3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5'
29732 3' -52.9 NC_006273.1 + 177151 0.69 0.969264
Target:  5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3'
miRNA:   3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 178069 0.68 0.977167
Target:  5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3'
miRNA:   3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 178990 0.67 0.986863
Target:  5'- cGUGCGCaCGgcg-CGGUCcCGCGAuGGa -3'
miRNA:   3'- aCAUGCG-GCaaaaGCCGGaGUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 187865 0.68 0.977167
Target:  5'- --cGCGCCGUgggaUCGGCUUCGagauCGAGc -3'
miRNA:   3'- acaUGCGGCAaa--AGCCGGAGU----GCUCc -5'
29732 3' -52.9 NC_006273.1 + 188477 0.69 0.969264
Target:  5'- --cGCGCC----UCGGCCUCGgGAGa -3'
miRNA:   3'- acaUGCGGcaaaAGCCGGAGUgCUCc -5'
29732 3' -52.9 NC_006273.1 + 190595 0.66 0.994724
Target:  5'- cGUcCGCCGgcgcccaUCGGCCgCGCGAu- -3'
miRNA:   3'- aCAuGCGGCaaa----AGCCGGaGUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 196469 0.66 0.993923
Target:  5'- cGUACGCCGccUUgGGCgUCACcacguuGGa -3'
miRNA:   3'- aCAUGCGGCaaAAgCCGgAGUGcu----CC- -5'
29732 3' -52.9 NC_006273.1 + 196631 0.68 0.972088
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 200899 0.66 0.992031
Target:  5'- --aACGCCGgcgcUUUCcGCCgucuggugCACGAGGc -3'
miRNA:   3'- acaUGCGGCa---AAAGcCGGa-------GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 202216 1.11 0.007876
Target:  5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3'
miRNA:   3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 204638 0.71 0.913012
Target:  5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3'
miRNA:   3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 204789 0.66 0.994724
Target:  5'- uUGgcgGCGCCGgugccgcCGGUCUCGCGcacgagcucgaAGGa -3'
miRNA:   3'- -ACa--UGCGGCaaaa---GCCGGAGUGC-----------UCC- -5'
29732 3' -52.9 NC_006273.1 + 227085 0.7 0.947984
Target:  5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3'
miRNA:   3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 234315 0.69 0.969264
Target:  5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3'
miRNA:   3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.