miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 159328 0.67 0.989698
Target:  5'- -aUACGUCGUcacCGuCCUCugGAGGa -3'
miRNA:   3'- acAUGCGGCAaaaGCcGGAGugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 148696 0.67 0.986863
Target:  5'- cGUGgGCCGgc--CGGCaagCugGAGGu -3'
miRNA:   3'- aCAUgCGGCaaaaGCCGga-GugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 148655 0.67 0.986863
Target:  5'- --gGCGCCGga---GGCCggcCugGAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 143688 0.66 0.995437
Target:  5'- gGUGCGUCGgcuagCGGUCUggCugGAGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGGA--GugCUCc -5'
29732 3' -52.9 NC_006273.1 + 143353 0.66 0.995437
Target:  5'- cUGUugGaCCGgcg-CGGUCUgGaCGAGGu -3'
miRNA:   3'- -ACAugC-GGCaaaaGCCGGAgU-GCUCC- -5'
29732 3' -52.9 NC_006273.1 + 141073 0.68 0.977167
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
29732 3' -52.9 NC_006273.1 + 139942 0.67 0.990923
Target:  5'- --gGCGCUGg---UGGCCU-GCGAGGc -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAgUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 139887 0.72 0.90096
Target:  5'- cGgcCGCCGaUUUcUCGGUCUC-CGAGGc -3'
miRNA:   3'- aCauGCGGC-AAA-AGCCGGAGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 133907 0.68 0.983462
Target:  5'- --aGCGCCuugucgCGGCC-CAUGAGGu -3'
miRNA:   3'- acaUGCGGcaaaa-GCCGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 133206 0.69 0.966242
Target:  5'- --gACGCCG----CGGUCUCACcGAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5'
29732 3' -52.9 NC_006273.1 + 133005 0.66 0.993028
Target:  5'- cGUcuaGCGCCGUUguugcagaGuGCCaCGCGAGGu -3'
miRNA:   3'- aCA---UGCGGCAAaag-----C-CGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 125338 0.73 0.852695
Target:  5'- cGU-CGCCGUccuccucaccggaCGGCCUCACGAGu -3'
miRNA:   3'- aCAuGCGGCAaaa----------GCCGGAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 123477 0.67 0.989698
Target:  5'- gUGUAaCGCCGUgugaugcgCGGCUUUACGucGu -3'
miRNA:   3'- -ACAU-GCGGCAaaa-----GCCGGAGUGCucC- -5'
29732 3' -52.9 NC_006273.1 + 117455 0.69 0.966554
Target:  5'- cGU-CGCCGgcUgugucgucucuagcgUGGCCUCACGAcGGa -3'
miRNA:   3'- aCAuGCGGCaaAa--------------GCCGGAGUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 117414 0.77 0.639195
Target:  5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3'
miRNA:   3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 113674 0.68 0.979215
Target:  5'- cUGUugGCCGUgaccgagagcgUgcgcagCGGCUgggaucccucacgUCGCGAGGa -3'
miRNA:   3'- -ACAugCGGCA-----------Aaa----GCCGG-------------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 112147 0.74 0.793568
Target:  5'- cGU-CGCCGUcuucUUCGaGCCgCACGAGGa -3'
miRNA:   3'- aCAuGCGGCAa---AAGC-CGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 105633 0.68 0.972088
Target:  5'- --cACGCuCGggUUCGGuCCUCACGuGu -3'
miRNA:   3'- acaUGCG-GCaaAAGCC-GGAGUGCuCc -5'
29732 3' -52.9 NC_006273.1 + 105170 0.66 0.995437
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 99840 0.66 0.995437
Target:  5'- aUGUugACGUCGUccagugCGGCCUCcuCGAuGGg -3'
miRNA:   3'- -ACA--UGCGGCAaaa---GCCGGAGu-GCU-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.