Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29732 | 3' | -52.9 | NC_006273.1 | + | 92115 | 0.68 | 0.977167 |
Target: 5'- --aACGCCGUa---GGCCggcUACGGGGa -3' miRNA: 3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 89586 | 0.71 | 0.918696 |
Target: 5'- gGgcCGUCGUgggUGGCCUCGCGGuGGc -3' miRNA: 3'- aCauGCGGCAaaaGCCGGAGUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 83012 | 0.67 | 0.990923 |
Target: 5'- --cACGCCGg---UGGCacaccugCACGAGGa -3' miRNA: 3'- acaUGCGGCaaaaGCCGga-----GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 79582 | 0.66 | 0.993028 |
Target: 5'- cGUgACGCUGUauacgUCGGCagggucCACGGGGu -3' miRNA: 3'- aCA-UGCGGCAaa---AGCCGga----GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 76533 | 0.7 | 0.939137 |
Target: 5'- cGU-CGCCGc--UCGGCgCggcgCACGAGGa -3' miRNA: 3'- aCAuGCGGCaaaAGCCG-Ga---GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 76094 | 0.7 | 0.95207 |
Target: 5'- aUGUGgGCCGgcacCGGCgUCAUGAGc -3' miRNA: 3'- -ACAUgCGGCaaaaGCCGgAGUGCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 68546 | 0.7 | 0.934371 |
Target: 5'- gGUGCGCUGgaugcUGGCUuuUCugGAGGa -3' miRNA: 3'- aCAUGCGGCaaaa-GCCGG--AGugCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 68188 | 0.66 | 0.993028 |
Target: 5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3' miRNA: 3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 50339 | 0.66 | 0.993923 |
Target: 5'- --gGCGCCGgugUUGGUCgC-CGAGGg -3' miRNA: 3'- acaUGCGGCaaaAGCCGGaGuGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 41253 | 0.66 | 0.993923 |
Target: 5'- cGUGgaGUCGa---CGGCCUC-CGAGGg -3' miRNA: 3'- aCAUg-CGGCaaaaGCCGGAGuGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 39422 | 0.69 | 0.969264 |
Target: 5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3' miRNA: 3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 38720 | 0.68 | 0.982322 |
Target: 5'- cGUGCGCCacgccaagauucaccGU--UCGGCCUCGCa--- -3' miRNA: 3'- aCAUGCGG---------------CAaaAGCCGGAGUGcucc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 37892 | 0.68 | 0.972088 |
Target: 5'- --gGCGCCG-----GGCCUCGCGcAGGu -3' miRNA: 3'- acaUGCGGCaaaagCCGGAGUGC-UCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 35407 | 0.7 | 0.95207 |
Target: 5'- uUGUugGCCucg-UCGGCCUCggccacguuccACGAGc -3' miRNA: 3'- -ACAugCGGcaaaAGCCGGAG-----------UGCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 33134 | 0.7 | 0.95207 |
Target: 5'- --cGCGCCGccg-CGGCUUCAUGuGGc -3' miRNA: 3'- acaUGCGGCaaaaGCCGGAGUGCuCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 20504 | 0.67 | 0.990923 |
Target: 5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3' miRNA: 3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 18614 | 0.72 | 0.90096 |
Target: 5'- gGUACGUCG---UCGGCCUCGUGGGc -3' miRNA: 3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 1739 | 0.68 | 0.972088 |
Target: 5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3' miRNA: 3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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