Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29732 | 3' | -52.9 | NC_006273.1 | + | 105170 | 0.66 | 0.995437 |
Target: 5'- --gGCGCCG----CGGCCUCGCccAGGu -3' miRNA: 3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 141073 | 0.68 | 0.977167 |
Target: 5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3' miRNA: 3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 92115 | 0.68 | 0.977167 |
Target: 5'- --aACGCCGUa---GGCCggcUACGGGGa -3' miRNA: 3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 117414 | 0.77 | 0.639195 |
Target: 5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3' miRNA: 3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 161828 | 0.75 | 0.756969 |
Target: 5'- gGUcCGCgCG---UCGGCCUCugGAGGa -3' miRNA: 3'- aCAuGCG-GCaaaAGCCGGAGugCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 162143 | 0.74 | 0.819575 |
Target: 5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3' miRNA: 3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 18614 | 0.72 | 0.90096 |
Target: 5'- gGUACGUCG---UCGGCCUCGUGGGc -3' miRNA: 3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 204638 | 0.71 | 0.913012 |
Target: 5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3' miRNA: 3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 89586 | 0.71 | 0.918696 |
Target: 5'- gGgcCGUCGUgggUGGCCUCGCGGuGGc -3' miRNA: 3'- aCauGCGGCAaaaGCCGGAGUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 175605 | 0.7 | 0.939137 |
Target: 5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3' miRNA: 3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 227085 | 0.7 | 0.947984 |
Target: 5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3' miRNA: 3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 133206 | 0.69 | 0.966242 |
Target: 5'- --gACGCCG----CGGUCUCACcGAGGu -3' miRNA: 3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 39422 | 0.69 | 0.969264 |
Target: 5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3' miRNA: 3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 177151 | 0.69 | 0.969264 |
Target: 5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3' miRNA: 3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 188477 | 0.69 | 0.969264 |
Target: 5'- --cGCGCC----UCGGCCUCGgGAGa -3' miRNA: 3'- acaUGCGGcaaaAGCCGGAGUgCUCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 1739 | 0.68 | 0.972088 |
Target: 5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3' miRNA: 3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 105633 | 0.68 | 0.972088 |
Target: 5'- --cACGCuCGggUUCGGuCCUCACGuGu -3' miRNA: 3'- acaUGCG-GCaaAAGCC-GGAGUGCuCc -5' |
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29732 | 3' | -52.9 | NC_006273.1 | + | 202216 | 1.11 | 0.007876 |
Target: 5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3' miRNA: 3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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