miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 202216 1.11 0.007876
Target:  5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3'
miRNA:   3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 178069 0.68 0.977167
Target:  5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3'
miRNA:   3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 148655 0.67 0.986863
Target:  5'- --gGCGCCGga---GGCCggcCugGAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 105170 0.66 0.995437
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 18614 0.72 0.90096
Target:  5'- gGUACGUCG---UCGGCCUCGUGGGc -3'
miRNA:   3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 204638 0.71 0.913012
Target:  5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3'
miRNA:   3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 175605 0.7 0.939137
Target:  5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3'
miRNA:   3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5'
29732 3' -52.9 NC_006273.1 + 227085 0.7 0.947984
Target:  5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3'
miRNA:   3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 177151 0.69 0.969264
Target:  5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3'
miRNA:   3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 141073 0.68 0.977167
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
29732 3' -52.9 NC_006273.1 + 1739 0.68 0.972088
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 39422 0.69 0.969264
Target:  5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3'
miRNA:   3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 117414 0.77 0.639195
Target:  5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3'
miRNA:   3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 105633 0.68 0.972088
Target:  5'- --cACGCuCGggUUCGGuCCUCACGuGu -3'
miRNA:   3'- acaUGCG-GCaaAAGCC-GGAGUGCuCc -5'
29732 3' -52.9 NC_006273.1 + 161828 0.75 0.756969
Target:  5'- gGUcCGCgCG---UCGGCCUCugGAGGa -3'
miRNA:   3'- aCAuGCG-GCaaaAGCCGGAGugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 133206 0.69 0.966242
Target:  5'- --gACGCCG----CGGUCUCACcGAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5'
29732 3' -52.9 NC_006273.1 + 92115 0.68 0.977167
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 187865 0.68 0.977167
Target:  5'- --cGCGCCGUgggaUCGGCUUCGagauCGAGc -3'
miRNA:   3'- acaUGCGGCAaa--AGCCGGAGU----GCUCc -5'
29732 3' -52.9 NC_006273.1 + 162143 0.74 0.819575
Target:  5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3'
miRNA:   3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 89586 0.71 0.918696
Target:  5'- gGgcCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- aCauGCGGCAaaaGCCGGAGUGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.