miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 68188 0.66 0.993028
Target:  5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3'
miRNA:   3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 173359 0.67 0.990203
Target:  5'- gGUGcCGCCGcucugUUCGGCuauuacggucuggauCUCGCGcAGGg -3'
miRNA:   3'- aCAU-GCGGCaa---AAGCCG---------------GAGUGC-UCC- -5'
29732 3' -52.9 NC_006273.1 + 187865 0.68 0.977167
Target:  5'- --cGCGCCGUgggaUCGGCUUCGagauCGAGc -3'
miRNA:   3'- acaUGCGGCAaa--AGCCGGAGU----GCUCc -5'
29732 3' -52.9 NC_006273.1 + 204789 0.66 0.994724
Target:  5'- uUGgcgGCGCCGgugccgcCGGUCUCGCGcacgagcucgaAGGa -3'
miRNA:   3'- -ACa--UGCGGCaaaa---GCCGGAGUGC-----------UCC- -5'
29732 3' -52.9 NC_006273.1 + 200899 0.66 0.992031
Target:  5'- --aACGCCGgcgcUUUCcGCCgucuggugCACGAGGc -3'
miRNA:   3'- acaUGCGGCa---AAAGcCGGa-------GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 178069 0.68 0.977167
Target:  5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3'
miRNA:   3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 105170 0.66 0.995437
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 141073 0.68 0.977167
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
29732 3' -52.9 NC_006273.1 + 92115 0.68 0.977167
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 20504 0.67 0.990923
Target:  5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5'
29732 3' -52.9 NC_006273.1 + 178990 0.67 0.986863
Target:  5'- cGUGCGCaCGgcg-CGGUCcCGCGAuGGa -3'
miRNA:   3'- aCAUGCG-GCaaaaGCCGGaGUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 148655 0.67 0.986863
Target:  5'- --gGCGCCGga---GGCCggcCugGAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 37892 0.68 0.972088
Target:  5'- --gGCGCCG-----GGCCUCGCGcAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGAGUGC-UCC- -5'
29732 3' -52.9 NC_006273.1 + 41253 0.66 0.993923
Target:  5'- cGUGgaGUCGa---CGGCCUC-CGAGGg -3'
miRNA:   3'- aCAUg-CGGCaaaaGCCGGAGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 190595 0.66 0.994724
Target:  5'- cGUcCGCCGgcgcccaUCGGCCgCGCGAu- -3'
miRNA:   3'- aCAuGCGGCaaa----AGCCGGaGUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 35407 0.7 0.95207
Target:  5'- uUGUugGCCucg-UCGGCCUCggccacguuccACGAGc -3'
miRNA:   3'- -ACAugCGGcaaaAGCCGGAG-----------UGCUCc -5'
29732 3' -52.9 NC_006273.1 + 143353 0.66 0.995437
Target:  5'- cUGUugGaCCGgcg-CGGUCUgGaCGAGGu -3'
miRNA:   3'- -ACAugC-GGCaaaaGCCGGAgU-GCUCC- -5'
29732 3' -52.9 NC_006273.1 + 38720 0.68 0.982322
Target:  5'- cGUGCGCCacgccaagauucaccGU--UCGGCCUCGCa--- -3'
miRNA:   3'- aCAUGCGG---------------CAaaAGCCGGAGUGcucc -5'
29732 3' -52.9 NC_006273.1 + 113674 0.68 0.979215
Target:  5'- cUGUugGCCGUgaccgagagcgUgcgcagCGGCUgggaucccucacgUCGCGAGGa -3'
miRNA:   3'- -ACAugCGGCA-----------Aaa----GCCGG-------------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 196631 0.68 0.972088
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.