miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29737 3' -57.6 NC_006273.1 + 177530 0.66 0.939818
Target:  5'- gGGGC-CCGCUgGCUCGgcGCGgCUGu- -3'
miRNA:   3'- -CCUGuGGCGG-CGAGCaaCGCgGAUgc -5'
29737 3' -57.6 NC_006273.1 + 142625 0.66 0.939818
Target:  5'- cGACACCagauGgCGCUCGUUGaccaggaaagcUGUCUACGc -3'
miRNA:   3'- cCUGUGG----CgGCGAGCAAC-----------GCGGAUGC- -5'
29737 3' -57.6 NC_006273.1 + 40917 0.66 0.939818
Target:  5'- -cGCACCGUcugCGCUCGggcgGaCGCgUGCGg -3'
miRNA:   3'- ccUGUGGCG---GCGAGCaa--C-GCGgAUGC- -5'
29737 3' -57.6 NC_006273.1 + 134937 0.66 0.935231
Target:  5'- cGACACCGgCGCcgCGUgacgcGCGCCcAUa -3'
miRNA:   3'- cCUGUGGCgGCGa-GCAa----CGCGGaUGc -5'
29737 3' -57.6 NC_006273.1 + 114437 0.66 0.935231
Target:  5'- aGACGCC-CCGCgucaccggCGgcgGCGCCaugGCGa -3'
miRNA:   3'- cCUGUGGcGGCGa-------GCaa-CGCGGa--UGC- -5'
29737 3' -57.6 NC_006273.1 + 190901 0.66 0.930429
Target:  5'- --uCACCGCCGCUCGcccgUUGuCGC--GCGg -3'
miRNA:   3'- ccuGUGGCGGCGAGC----AAC-GCGgaUGC- -5'
29737 3' -57.6 NC_006273.1 + 175495 0.66 0.930429
Target:  5'- cGuCACuCGCCGC--GUUGCGaCCUGCu -3'
miRNA:   3'- cCuGUG-GCGGCGagCAACGC-GGAUGc -5'
29737 3' -57.6 NC_006273.1 + 82832 0.66 0.930429
Target:  5'- uGGGCuACUGCUGCagGUggccgaGCGCCUggGCGc -3'
miRNA:   3'- -CCUG-UGGCGGCGagCAa-----CGCGGA--UGC- -5'
29737 3' -57.6 NC_006273.1 + 186728 0.66 0.929936
Target:  5'- gGGAUaucccguccugcgACCGCUGCg---UGCGCCgACGg -3'
miRNA:   3'- -CCUG-------------UGGCGGCGagcaACGCGGaUGC- -5'
29737 3' -57.6 NC_006273.1 + 55470 0.66 0.925409
Target:  5'- cGGcACGCCGCauuuccuaaccCGCgcagcaUGUUGCGCUUGCu -3'
miRNA:   3'- -CC-UGUGGCG-----------GCGa-----GCAACGCGGAUGc -5'
29737 3' -57.6 NC_006273.1 + 173358 0.66 0.925409
Target:  5'- cGG-UGCCGCCGCUCuGUucgGCuaUUACGg -3'
miRNA:   3'- -CCuGUGGCGGCGAG-CAa--CGcgGAUGC- -5'
29737 3' -57.6 NC_006273.1 + 122200 0.66 0.925409
Target:  5'- cGGCgACCGCgCGaCUCcaUGCuGCCUGCGc -3'
miRNA:   3'- cCUG-UGGCG-GC-GAGcaACG-CGGAUGC- -5'
29737 3' -57.6 NC_006273.1 + 117473 0.66 0.925409
Target:  5'- cGACGCCGCCGCg-GUUuC-CUUACGg -3'
miRNA:   3'- cCUGUGGCGGCGagCAAcGcGGAUGC- -5'
29737 3' -57.6 NC_006273.1 + 108693 0.66 0.925409
Target:  5'- ---gGCUGCUGCgUCGUgacgGCGCCUAa- -3'
miRNA:   3'- ccugUGGCGGCG-AGCAa---CGCGGAUgc -5'
29737 3' -57.6 NC_006273.1 + 144150 0.66 0.920173
Target:  5'- cGGcACGCCGCCGaagcCUCGc-GCGCCg--- -3'
miRNA:   3'- -CC-UGUGGCGGC----GAGCaaCGCGGaugc -5'
29737 3' -57.6 NC_006273.1 + 14340 0.66 0.920173
Target:  5'- uGACGgCGCUGCa-GUUGUGCCgcCGg -3'
miRNA:   3'- cCUGUgGCGGCGagCAACGCGGauGC- -5'
29737 3' -57.6 NC_006273.1 + 138037 0.66 0.920173
Target:  5'- cGGCGCCGgCGcCUgGUUGCuGCC-GCGu -3'
miRNA:   3'- cCUGUGGCgGC-GAgCAACG-CGGaUGC- -5'
29737 3' -57.6 NC_006273.1 + 91899 0.66 0.920173
Target:  5'- aGGCGCCGuaGCUCauUUGCGCCg--- -3'
miRNA:   3'- cCUGUGGCggCGAGc-AACGCGGaugc -5'
29737 3' -57.6 NC_006273.1 + 102100 0.66 0.920173
Target:  5'- ---aACCGCCGCU---UGCGCCcgagACGg -3'
miRNA:   3'- ccugUGGCGGCGAgcaACGCGGa---UGC- -5'
29737 3' -57.6 NC_006273.1 + 129929 0.66 0.920173
Target:  5'- cGGCGCCGaCUcCUUGUaGCGCCgACGg -3'
miRNA:   3'- cCUGUGGC-GGcGAGCAaCGCGGaUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.