miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29737 5' -57.7 NC_006273.1 + 16983 0.66 0.920786
Target:  5'- gACCGCGAcuacGCGCGgcaguuucGCUGGCUCU-GUCg -3'
miRNA:   3'- -UGGCGCUc---CGCGU--------UGACUGGGAgUAG- -5'
29737 5' -57.7 NC_006273.1 + 179790 0.66 0.920786
Target:  5'- gUCGCGAguucauguuGGCGCGcgaccuGCUGGCCCUg--- -3'
miRNA:   3'- uGGCGCU---------CCGCGU------UGACUGGGAguag -5'
29737 5' -57.7 NC_006273.1 + 89518 0.66 0.917503
Target:  5'- gGCUGCucuuGAGGCGCAcCUccgaaacgaaacccaGGgCCUCGUCg -3'
miRNA:   3'- -UGGCG----CUCCGCGUuGA---------------CUgGGAGUAG- -5'
29737 5' -57.7 NC_006273.1 + 36717 0.66 0.91357
Target:  5'- gGCCGCGAgcggaGGCGCGcgagcggcggcacaGCUcGGCCCgaugGUCg -3'
miRNA:   3'- -UGGCGCU-----CCGCGU--------------UGA-CUGGGag--UAG- -5'
29737 5' -57.7 NC_006273.1 + 145800 0.66 0.90953
Target:  5'- cACCGCGAGGCcacccaCGAC-GGCCC-CAa- -3'
miRNA:   3'- -UGGCGCUCCGc-----GUUGaCUGGGaGUag -5'
29737 5' -57.7 NC_006273.1 + 203918 0.66 0.90953
Target:  5'- gGCCGacgagGAGGCGCAGCcacCgCCUCAUg -3'
miRNA:   3'- -UGGCg----CUCCGCGUUGacuG-GGAGUAg -5'
29737 5' -57.7 NC_006273.1 + 153703 0.66 0.90953
Target:  5'- uGCCGCGAGGCGuCAugUucGACggUCAg- -3'
miRNA:   3'- -UGGCGCUCCGC-GUugA--CUGggAGUag -5'
29737 5' -57.7 NC_006273.1 + 43160 0.66 0.907764
Target:  5'- cACCGCGuGGCGUAccucggggucucguACgcgUGACUCUCuguUCg -3'
miRNA:   3'- -UGGCGCuCCGCGU--------------UG---ACUGGGAGu--AG- -5'
29737 5' -57.7 NC_006273.1 + 123070 0.66 0.895494
Target:  5'- aGCCGC-AGGCGaaacgccacuggguCGGCUGGCgCCUCGg- -3'
miRNA:   3'- -UGGCGcUCCGC--------------GUUGACUG-GGAGUag -5'
29737 5' -57.7 NC_006273.1 + 216869 0.66 0.890994
Target:  5'- gGCCG-GcAGGCGC-GCaGGCCCUCGa- -3'
miRNA:   3'- -UGGCgC-UCCGCGuUGaCUGGGAGUag -5'
29737 5' -57.7 NC_006273.1 + 109507 0.66 0.890994
Target:  5'- cCCGCGcGGGCGUGccuccugcauGCUGGCCgUCgAUCc -3'
miRNA:   3'- uGGCGC-UCCGCGU----------UGACUGGgAG-UAG- -5'
29737 5' -57.7 NC_006273.1 + 49377 0.66 0.890994
Target:  5'- aGCgGCGGuaGUGCccuGCcGACCCUCGUCg -3'
miRNA:   3'- -UGgCGCUc-CGCGu--UGaCUGGGAGUAG- -5'
29737 5' -57.7 NC_006273.1 + 130810 0.67 0.884386
Target:  5'- cAUCGUGccGGCGCGACgaUGACgCUCGUUc -3'
miRNA:   3'- -UGGCGCu-CCGCGUUG--ACUGgGAGUAG- -5'
29737 5' -57.7 NC_006273.1 + 137712 0.67 0.884386
Target:  5'- uACCGCGAcGGCGaug--GAUCCUCuGUCu -3'
miRNA:   3'- -UGGCGCU-CCGCguugaCUGGGAG-UAG- -5'
29737 5' -57.7 NC_006273.1 + 32039 0.67 0.877569
Target:  5'- cCCGCGAcauaugcguGGCGCggUUGcaagcgcaGCCCUCgaGUCg -3'
miRNA:   3'- uGGCGCU---------CCGCGuuGAC--------UGGGAG--UAG- -5'
29737 5' -57.7 NC_006273.1 + 101625 0.67 0.877569
Target:  5'- gGCCGCGuGaGUGCAGCuccaUGGCCgC-CGUCg -3'
miRNA:   3'- -UGGCGCuC-CGCGUUG----ACUGG-GaGUAG- -5'
29737 5' -57.7 NC_006273.1 + 56138 0.67 0.877569
Target:  5'- gGCCGCgGAGGCgGCGACcGACgCggaggUCGUCc -3'
miRNA:   3'- -UGGCG-CUCCG-CGUUGaCUGgG-----AGUAG- -5'
29737 5' -57.7 NC_006273.1 + 91235 0.67 0.870547
Target:  5'- gGCgCGCGAGGCuucggcggcguGCcGCUGACCCa---- -3'
miRNA:   3'- -UG-GCGCUCCG-----------CGuUGACUGGGaguag -5'
29737 5' -57.7 NC_006273.1 + 33066 0.67 0.870547
Target:  5'- cGCCGuCGGGuGCGCGcCUGcucgucaucgccGCgCCUCGUCg -3'
miRNA:   3'- -UGGC-GCUC-CGCGUuGAC------------UG-GGAGUAG- -5'
29737 5' -57.7 NC_006273.1 + 78702 0.67 0.870547
Target:  5'- cGCCGCcgGAGGCGCggUU--CCCUC-UCu -3'
miRNA:   3'- -UGGCG--CUCCGCGuuGAcuGGGAGuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.