miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 2447 0.66 0.992216
Target:  5'- uGGACcGcGAGCAGUGGGAGcggcCGcGCu -3'
miRNA:   3'- -CCUGuCaCUCGUCGUCCUCaa--GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 92213 0.66 0.992216
Target:  5'- aGACGGUgcGAGCAGUuGGGGaugCGGcGCg -3'
miRNA:   3'- cCUGUCA--CUCGUCGuCCUCaa-GCU-CG- -5'
29741 3' -53.2 NC_006273.1 + 72798 0.66 0.992216
Target:  5'- cGGGCGGguaGAgccgcagacggcGCAGCAGGuAGUcggugUCGuAGCg -3'
miRNA:   3'- -CCUGUCa--CU------------CGUCGUCC-UCA-----AGC-UCG- -5'
29741 3' -53.2 NC_006273.1 + 197340 0.66 0.992216
Target:  5'- uGGACcGcGAGCAGUGGGAGcggcCGcGCu -3'
miRNA:   3'- -CCUGuCaCUCGUCGUCCUCaa--GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 189965 0.66 0.992216
Target:  5'- cGGC-GUGGGCGGCucgcGGAGacUGGGCu -3'
miRNA:   3'- cCUGuCACUCGUCGu---CCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 167648 0.66 0.991118
Target:  5'- aGACuGUGAGCGGCGgcgcaacggcGGGGU-CG-GCc -3'
miRNA:   3'- cCUGuCACUCGUCGU----------CCUCAaGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 70675 0.66 0.991118
Target:  5'- -cACGGUG-GCGGCGguGGAGggCGcGCg -3'
miRNA:   3'- ccUGUCACuCGUCGU--CCUCaaGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 36443 0.66 0.990766
Target:  5'- --uCAGuUGGGCGGCAGGGGcaUgcggccuuagcggcUCGGGCu -3'
miRNA:   3'- ccuGUC-ACUCGUCGUCCUC--A--------------AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 66064 0.66 0.989902
Target:  5'- aGAUAGUGAGCuGguGGAGaaUCccGCa -3'
miRNA:   3'- cCUGUCACUCGuCguCCUCa-AGcuCG- -5'
29741 3' -53.2 NC_006273.1 + 166149 0.66 0.989902
Target:  5'- uGGGCGGgagGAcGC-GUGGGAGcgCGGGUg -3'
miRNA:   3'- -CCUGUCa--CU-CGuCGUCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 139395 0.66 0.98856
Target:  5'- ---gAGUGGGcCAGCccGAGUUCGGGg -3'
miRNA:   3'- ccugUCACUC-GUCGucCUCAAGCUCg -5'
29741 3' -53.2 NC_006273.1 + 182586 0.66 0.98856
Target:  5'- uGACGGUGAGaacucGGAGacCGAGCg -3'
miRNA:   3'- cCUGUCACUCgucguCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 71858 0.67 0.985463
Target:  5'- cGGGgAG-GAGCAGCuGGuGuUUCGAcuGCg -3'
miRNA:   3'- -CCUgUCaCUCGUCGuCCuC-AAGCU--CG- -5'
29741 3' -53.2 NC_006273.1 + 87697 0.67 0.983693
Target:  5'- uGGCGGUGGuGCAGCGGcGGc-UGAGCg -3'
miRNA:   3'- cCUGUCACU-CGUCGUCcUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 163052 0.67 0.983693
Target:  5'- cGGGCGa-GAcGguGCAGGAGUcCGAGg -3'
miRNA:   3'- -CCUGUcaCU-CguCGUCCUCAaGCUCg -5'
29741 3' -53.2 NC_006273.1 + 102303 0.67 0.983693
Target:  5'- uGACAG-GGGCAacGCGGGcAGgUCGuGCg -3'
miRNA:   3'- cCUGUCaCUCGU--CGUCC-UCaAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 19726 0.67 0.983508
Target:  5'- cGGccGCAGUGGGCccacGGCuuggacauugucgAGGAGgaCGAGUg -3'
miRNA:   3'- -CC--UGUCACUCG----UCG-------------UCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 218594 0.67 0.982555
Target:  5'- aGACGGUaGAuuucaccggcuagacGCuGCAGGGGcggCGAGCg -3'
miRNA:   3'- cCUGUCA-CU---------------CGuCGUCCUCaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 79634 0.67 0.979669
Target:  5'- -aGCAGggugGAGUAGCAGaGGUUgUGAGCc -3'
miRNA:   3'- ccUGUCa---CUCGUCGUCcUCAA-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 175164 0.67 0.9774
Target:  5'- uGGACGcGUGAGUAGCGGuc---UGAGCa -3'
miRNA:   3'- -CCUGU-CACUCGUCGUCcucaaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.