miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 197434 1.15 0.003285
Target:  5'- cGGACAGUGAGCAGCAGGAGUUCGAGCa -3'
miRNA:   3'- -CCUGUCACUCGUCGUCCUCAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 147565 0.76 0.676427
Target:  5'- cGGCGG-GAGCAGCGGGGGcggCGGGg -3'
miRNA:   3'- cCUGUCaCUCGUCGUCCUCaa-GCUCg -5'
29741 3' -53.2 NC_006273.1 + 129419 0.74 0.741589
Target:  5'- aGuCAGUGGGaaugccuacuuuaGGCAGGAGcUCGAGCg -3'
miRNA:   3'- cCuGUCACUCg------------UCGUCCUCaAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 41133 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 1195 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 162387 0.73 0.826742
Target:  5'- uGGCGGUGgcGGCGGCGGGAGcggCGgucAGCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCCUCaa-GC---UCG- -5'
29741 3' -53.2 NC_006273.1 + 84596 0.72 0.843111
Target:  5'- uGACuGUGAGUAGCAGaAGUUccaCGAGUa -3'
miRNA:   3'- cCUGuCACUCGUCGUCcUCAA---GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 53909 0.72 0.857968
Target:  5'- cGACGGUGuugcuggaggucuGGCGGCAGcAGUacacgUCGAGCg -3'
miRNA:   3'- cCUGUCAC-------------UCGUCGUCcUCA-----AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 203144 0.72 0.85873
Target:  5'- -cGCGGUG-GCAGCGGGGGUgguggggaUCG-GCa -3'
miRNA:   3'- ccUGUCACuCGUCGUCCUCA--------AGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 54932 0.72 0.85873
Target:  5'- aGGGCGGUGGGCuGCAGucGGGUgguggCG-GCg -3'
miRNA:   3'- -CCUGUCACUCGuCGUC--CUCAa----GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 109710 0.71 0.879941
Target:  5'- gGGACGGUG-GCAucggggaagagacGCgugAGGcGUUCGAGCg -3'
miRNA:   3'- -CCUGUCACuCGU-------------CG---UCCuCAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 141106 0.71 0.880641
Target:  5'- aGGGCGG-GAGgcaGGCGGGAG--CGGGCg -3'
miRNA:   3'- -CCUGUCaCUCg--UCGUCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 193321 0.71 0.900607
Target:  5'- cGACAGUcGAugugugguagccGCAGCAGGugaGGUUgGGGCg -3'
miRNA:   3'- cCUGUCA-CU------------CGUCGUCC---UCAAgCUCG- -5'
29741 3' -53.2 NC_006273.1 + 200310 0.7 0.912785
Target:  5'- uGGAUAgcGUGAGCGGCAcGGGGgcgUCGuGa -3'
miRNA:   3'- -CCUGU--CACUCGUCGU-CCUCa--AGCuCg -5'
29741 3' -53.2 NC_006273.1 + 145587 0.7 0.912785
Target:  5'- uGGACGG-GAcGUgAGCGGGGGccCGAGCg -3'
miRNA:   3'- -CCUGUCaCU-CG-UCGUCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 99833 0.7 0.924035
Target:  5'- cGACGGUG-GCugGGCGGGAGgagCG-GCg -3'
miRNA:   3'- cCUGUCACuCG--UCGUCCUCaa-GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 56917 0.69 0.948074
Target:  5'- cGACAGUGgcGGCAGCAGcccGUUUG-GCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCcu-CAAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 124101 0.69 0.948074
Target:  5'- aGGAaAGUGAGCGGCGGcgucgacaGAGcUCG-GCg -3'
miRNA:   3'- -CCUgUCACUCGUCGUC--------CUCaAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 140260 0.69 0.955321
Target:  5'- cGGGCGGaguuuuuuugggGAGCAGUGGGGGagggGAGCg -3'
miRNA:   3'- -CCUGUCa-----------CUCGUCGUCCUCaag-CUCG- -5'
29741 3' -53.2 NC_006273.1 + 171743 0.69 0.956081
Target:  5'- gGGGCAGcaUGAuagGC-GCGGGAGgcaCGGGCg -3'
miRNA:   3'- -CCUGUC--ACU---CGuCGUCCUCaa-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.