miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 175164 0.67 0.9774
Target:  5'- uGGACGcGUGAGUAGCGGuc---UGAGCa -3'
miRNA:   3'- -CCUGU-CACUCGUCGUCcucaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 188430 0.68 0.97495
Target:  5'- aGGGCGGUGGGUggaacAGCAGGuuguaGGUggUGAGg -3'
miRNA:   3'- -CCUGUCACUCG-----UCGUCC-----UCAa-GCUCg -5'
29741 3' -53.2 NC_006273.1 + 144327 0.68 0.97495
Target:  5'- cGGCGGUGGGCuGuCAGGcGUcCGAGa -3'
miRNA:   3'- cCUGUCACUCGuC-GUCCuCAaGCUCg -5'
29741 3' -53.2 NC_006273.1 + 230097 0.68 0.974695
Target:  5'- gGGGUGGUGAGCGGguucccaCAGGAGUcUCuGGCg -3'
miRNA:   3'- -CCUGUCACUCGUC-------GUCCUCA-AGcUCG- -5'
29741 3' -53.2 NC_006273.1 + 7705 0.68 0.972312
Target:  5'- cGGCAGUGgccgcGGCAGCGgGGAGga-GAGg -3'
miRNA:   3'- cCUGUCAC-----UCGUCGU-CCUCaagCUCg -5'
29741 3' -53.2 NC_006273.1 + 150490 0.68 0.969479
Target:  5'- -cGCGGUG-GCAGCuugGGGGGUgaGGGCa -3'
miRNA:   3'- ccUGUCACuCGUCG---UCCUCAagCUCG- -5'
29741 3' -53.2 NC_006273.1 + 39175 0.68 0.969479
Target:  5'- cGGCGGUgcuccGAGCGGCGuugcGGGGUUgGAGg -3'
miRNA:   3'- cCUGUCA-----CUCGUCGU----CCUCAAgCUCg -5'
29741 3' -53.2 NC_006273.1 + 47441 0.68 0.969479
Target:  5'- cGGACGcccGcGAGC-GCGGcGAGUUCGGGg -3'
miRNA:   3'- -CCUGU---CaCUCGuCGUC-CUCAAGCUCg -5'
29741 3' -53.2 NC_006273.1 + 64080 0.68 0.966445
Target:  5'- cGGcCAucaGAGCAGCGGcGGggCGAGCa -3'
miRNA:   3'- -CCuGUca-CUCGUCGUCcUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 79879 0.68 0.96613
Target:  5'- uGGGCAGacUGAGCAcguugucGCuGGuGUagcccUCGAGCg -3'
miRNA:   3'- -CCUGUC--ACUCGU-------CGuCCuCA-----AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 208473 0.68 0.965173
Target:  5'- cGGGC-GUGAGCAuCAGGAGUguggugugauagaUGAGUg -3'
miRNA:   3'- -CCUGuCACUCGUcGUCCUCAa------------GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 94231 0.68 0.963204
Target:  5'- cGGcGCAGUccGCGGCAGG-GUUCcGGCc -3'
miRNA:   3'- -CC-UGUCAcuCGUCGUCCuCAAGcUCG- -5'
29741 3' -53.2 NC_006273.1 + 72680 0.68 0.963204
Target:  5'- aGGcACGGcGAGCuGguGGGGUgaagcaCGGGCa -3'
miRNA:   3'- -CC-UGUCaCUCGuCguCCUCAa-----GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 76273 0.68 0.959751
Target:  5'- cGGCGGUGGcacCAGCGGGgGGUUCagcgaGAGCa -3'
miRNA:   3'- cCUGUCACUc--GUCGUCC-UCAAG-----CUCG- -5'
29741 3' -53.2 NC_006273.1 + 112227 0.68 0.959751
Target:  5'- cGGCGGUGGcaaugcGCGGCGGGGGcuggcgCGAGg -3'
miRNA:   3'- cCUGUCACU------CGUCGUCCUCaa----GCUCg -5'
29741 3' -53.2 NC_006273.1 + 203978 0.68 0.959751
Target:  5'- aGACcucGGUGAGCcGCGGcGA-UUCGGGCg -3'
miRNA:   3'- cCUG---UCACUCGuCGUC-CUcAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 171743 0.69 0.956081
Target:  5'- gGGGCAGcaUGAuagGC-GCGGGAGgcaCGGGCg -3'
miRNA:   3'- -CCUGUC--ACU---CGuCGUCCUCaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 163004 0.69 0.956081
Target:  5'- cGGCAGcUGcGGCGGUAGGAcacgCGGGCg -3'
miRNA:   3'- cCUGUC-AC-UCGUCGUCCUcaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 140946 0.69 0.956081
Target:  5'- cGGAUGGgGGGUcgAGCGGGGGga-GGGCa -3'
miRNA:   3'- -CCUGUCaCUCG--UCGUCCUCaagCUCG- -5'
29741 3' -53.2 NC_006273.1 + 140260 0.69 0.955321
Target:  5'- cGGGCGGaguuuuuuugggGAGCAGUGGGGGagggGAGCg -3'
miRNA:   3'- -CCUGUCa-----------CUCGUCGUCCUCaag-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.