Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29741 | 3' | -53.2 | NC_006273.1 | + | 124101 | 0.69 | 0.948074 |
Target: 5'- aGGAaAGUGAGCGGCGGcgucgacaGAGcUCG-GCg -3' miRNA: 3'- -CCUgUCACUCGUCGUC--------CUCaAGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 56917 | 0.69 | 0.948074 |
Target: 5'- cGACAGUGgcGGCAGCAGcccGUUUG-GCa -3' miRNA: 3'- cCUGUCAC--UCGUCGUCcu-CAAGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 99833 | 0.7 | 0.924035 |
Target: 5'- cGACGGUG-GCugGGCGGGAGgagCG-GCg -3' miRNA: 3'- cCUGUCACuCG--UCGUCCUCaa-GCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 145587 | 0.7 | 0.912785 |
Target: 5'- uGGACGG-GAcGUgAGCGGGGGccCGAGCg -3' miRNA: 3'- -CCUGUCaCU-CG-UCGUCCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 200310 | 0.7 | 0.912785 |
Target: 5'- uGGAUAgcGUGAGCGGCAcGGGGgcgUCGuGa -3' miRNA: 3'- -CCUGU--CACUCGUCGU-CCUCa--AGCuCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 193321 | 0.71 | 0.900607 |
Target: 5'- cGACAGUcGAugugugguagccGCAGCAGGugaGGUUgGGGCg -3' miRNA: 3'- cCUGUCA-CU------------CGUCGUCC---UCAAgCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 141106 | 0.71 | 0.880641 |
Target: 5'- aGGGCGG-GAGgcaGGCGGGAG--CGGGCg -3' miRNA: 3'- -CCUGUCaCUCg--UCGUCCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 109710 | 0.71 | 0.879941 |
Target: 5'- gGGACGGUG-GCAucggggaagagacGCgugAGGcGUUCGAGCg -3' miRNA: 3'- -CCUGUCACuCGU-------------CG---UCCuCAAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 54932 | 0.72 | 0.85873 |
Target: 5'- aGGGCGGUGGGCuGCAGucGGGUgguggCG-GCg -3' miRNA: 3'- -CCUGUCACUCGuCGUC--CUCAa----GCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 203144 | 0.72 | 0.85873 |
Target: 5'- -cGCGGUG-GCAGCGGGGGUgguggggaUCG-GCa -3' miRNA: 3'- ccUGUCACuCGUCGUCCUCA--------AGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 53909 | 0.72 | 0.857968 |
Target: 5'- cGACGGUGuugcuggaggucuGGCGGCAGcAGUacacgUCGAGCg -3' miRNA: 3'- cCUGUCAC-------------UCGUCGUCcUCA-----AGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 84596 | 0.72 | 0.843111 |
Target: 5'- uGACuGUGAGUAGCAGaAGUUccaCGAGUa -3' miRNA: 3'- cCUGuCACUCGUCGUCcUCAA---GCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 162387 | 0.73 | 0.826742 |
Target: 5'- uGGCGGUGgcGGCGGCGGGAGcggCGgucAGCa -3' miRNA: 3'- cCUGUCAC--UCGUCGUCCUCaa-GC---UCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 41133 | 0.74 | 0.782923 |
Target: 5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3' miRNA: 3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 1195 | 0.74 | 0.782923 |
Target: 5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3' miRNA: 3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 129419 | 0.74 | 0.741589 |
Target: 5'- aGuCAGUGGGaaugccuacuuuaGGCAGGAGcUCGAGCg -3' miRNA: 3'- cCuGUCACUCg------------UCGUCCUCaAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 147565 | 0.76 | 0.676427 |
Target: 5'- cGGCGG-GAGCAGCGGGGGcggCGGGg -3' miRNA: 3'- cCUGUCaCUCGUCGUCCUCaa-GCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 197434 | 1.15 | 0.003285 |
Target: 5'- cGGACAGUGAGCAGCAGGAGUUCGAGCa -3' miRNA: 3'- -CCUGUCACUCGUCGUCCUCAAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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