miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 1195 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 2447 0.66 0.992216
Target:  5'- uGGACcGcGAGCAGUGGGAGcggcCGcGCu -3'
miRNA:   3'- -CCUGuCaCUCGUCGUCCUCaa--GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 7705 0.68 0.972312
Target:  5'- cGGCAGUGgccgcGGCAGCGgGGAGga-GAGg -3'
miRNA:   3'- cCUGUCAC-----UCGUCGU-CCUCaagCUCg -5'
29741 3' -53.2 NC_006273.1 + 19726 0.67 0.983508
Target:  5'- cGGccGCAGUGGGCccacGGCuuggacauugucgAGGAGgaCGAGUg -3'
miRNA:   3'- -CC--UGUCACUCG----UCG-------------UCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 36443 0.66 0.990766
Target:  5'- --uCAGuUGGGCGGCAGGGGcaUgcggccuuagcggcUCGGGCu -3'
miRNA:   3'- ccuGUC-ACUCGUCGUCCUC--A--------------AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 39175 0.68 0.969479
Target:  5'- cGGCGGUgcuccGAGCGGCGuugcGGGGUUgGAGg -3'
miRNA:   3'- cCUGUCA-----CUCGUCGU----CCUCAAgCUCg -5'
29741 3' -53.2 NC_006273.1 + 41133 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 47441 0.68 0.969479
Target:  5'- cGGACGcccGcGAGC-GCGGcGAGUUCGGGg -3'
miRNA:   3'- -CCUGU---CaCUCGuCGUC-CUCAAGCUCg -5'
29741 3' -53.2 NC_006273.1 + 53909 0.72 0.857968
Target:  5'- cGACGGUGuugcuggaggucuGGCGGCAGcAGUacacgUCGAGCg -3'
miRNA:   3'- cCUGUCAC-------------UCGUCGUCcUCA-----AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 54932 0.72 0.85873
Target:  5'- aGGGCGGUGGGCuGCAGucGGGUgguggCG-GCg -3'
miRNA:   3'- -CCUGUCACUCGuCGUC--CUCAa----GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 56917 0.69 0.948074
Target:  5'- cGACAGUGgcGGCAGCAGcccGUUUG-GCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCcu-CAAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 64080 0.68 0.966445
Target:  5'- cGGcCAucaGAGCAGCGGcGGggCGAGCa -3'
miRNA:   3'- -CCuGUca-CUCGUCGUCcUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 66064 0.66 0.989902
Target:  5'- aGAUAGUGAGCuGguGGAGaaUCccGCa -3'
miRNA:   3'- cCUGUCACUCGuCguCCUCa-AGcuCG- -5'
29741 3' -53.2 NC_006273.1 + 70675 0.66 0.991118
Target:  5'- -cACGGUG-GCGGCGguGGAGggCGcGCg -3'
miRNA:   3'- ccUGUCACuCGUCGU--CCUCaaGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 71858 0.67 0.985463
Target:  5'- cGGGgAG-GAGCAGCuGGuGuUUCGAcuGCg -3'
miRNA:   3'- -CCUgUCaCUCGUCGuCCuC-AAGCU--CG- -5'
29741 3' -53.2 NC_006273.1 + 72680 0.68 0.963204
Target:  5'- aGGcACGGcGAGCuGguGGGGUgaagcaCGGGCa -3'
miRNA:   3'- -CC-UGUCaCUCGuCguCCUCAa-----GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 72798 0.66 0.992216
Target:  5'- cGGGCGGguaGAgccgcagacggcGCAGCAGGuAGUcggugUCGuAGCg -3'
miRNA:   3'- -CCUGUCa--CU------------CGUCGUCC-UCA-----AGC-UCG- -5'
29741 3' -53.2 NC_006273.1 + 76273 0.68 0.959751
Target:  5'- cGGCGGUGGcacCAGCGGGgGGUUCagcgaGAGCa -3'
miRNA:   3'- cCUGUCACUc--GUCGUCC-UCAAG-----CUCG- -5'
29741 3' -53.2 NC_006273.1 + 79634 0.67 0.979669
Target:  5'- -aGCAGggugGAGUAGCAGaGGUUgUGAGCc -3'
miRNA:   3'- ccUGUCa---CUCGUCGUCcUCAA-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 79879 0.68 0.96613
Target:  5'- uGGGCAGacUGAGCAcguugucGCuGGuGUagcccUCGAGCg -3'
miRNA:   3'- -CCUGUC--ACUCGU-------CGuCCuCA-----AGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.