Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29741 | 3' | -53.2 | NC_006273.1 | + | 84596 | 0.72 | 0.843111 |
Target: 5'- uGACuGUGAGUAGCAGaAGUUccaCGAGUa -3' miRNA: 3'- cCUGuCACUCGUCGUCcUCAA---GCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 87697 | 0.67 | 0.983693 |
Target: 5'- uGGCGGUGGuGCAGCGGcGGc-UGAGCg -3' miRNA: 3'- cCUGUCACU-CGUCGUCcUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 92213 | 0.66 | 0.992216 |
Target: 5'- aGACGGUgcGAGCAGUuGGGGaugCGGcGCg -3' miRNA: 3'- cCUGUCA--CUCGUCGuCCUCaa-GCU-CG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 94231 | 0.68 | 0.963204 |
Target: 5'- cGGcGCAGUccGCGGCAGG-GUUCcGGCc -3' miRNA: 3'- -CC-UGUCAcuCGUCGUCCuCAAGcUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 99833 | 0.7 | 0.924035 |
Target: 5'- cGACGGUG-GCugGGCGGGAGgagCG-GCg -3' miRNA: 3'- cCUGUCACuCG--UCGUCCUCaa-GCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 102303 | 0.67 | 0.983693 |
Target: 5'- uGACAG-GGGCAacGCGGGcAGgUCGuGCg -3' miRNA: 3'- cCUGUCaCUCGU--CGUCC-UCaAGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 109710 | 0.71 | 0.879941 |
Target: 5'- gGGACGGUG-GCAucggggaagagacGCgugAGGcGUUCGAGCg -3' miRNA: 3'- -CCUGUCACuCGU-------------CG---UCCuCAAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 112227 | 0.68 | 0.959751 |
Target: 5'- cGGCGGUGGcaaugcGCGGCGGGGGcuggcgCGAGg -3' miRNA: 3'- cCUGUCACU------CGUCGUCCUCaa----GCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 124101 | 0.69 | 0.948074 |
Target: 5'- aGGAaAGUGAGCGGCGGcgucgacaGAGcUCG-GCg -3' miRNA: 3'- -CCUgUCACUCGUCGUC--------CUCaAGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 129419 | 0.74 | 0.741589 |
Target: 5'- aGuCAGUGGGaaugccuacuuuaGGCAGGAGcUCGAGCg -3' miRNA: 3'- cCuGUCACUCg------------UCGUCCUCaAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 139395 | 0.66 | 0.98856 |
Target: 5'- ---gAGUGGGcCAGCccGAGUUCGGGg -3' miRNA: 3'- ccugUCACUC-GUCGucCUCAAGCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 140260 | 0.69 | 0.955321 |
Target: 5'- cGGGCGGaguuuuuuugggGAGCAGUGGGGGagggGAGCg -3' miRNA: 3'- -CCUGUCa-----------CUCGUCGUCCUCaag-CUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 140946 | 0.69 | 0.956081 |
Target: 5'- cGGAUGGgGGGUcgAGCGGGGGga-GGGCa -3' miRNA: 3'- -CCUGUCaCUCG--UCGUCCUCaagCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 141106 | 0.71 | 0.880641 |
Target: 5'- aGGGCGG-GAGgcaGGCGGGAG--CGGGCg -3' miRNA: 3'- -CCUGUCaCUCg--UCGUCCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 144327 | 0.68 | 0.97495 |
Target: 5'- cGGCGGUGGGCuGuCAGGcGUcCGAGa -3' miRNA: 3'- cCUGUCACUCGuC-GUCCuCAaGCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 145587 | 0.7 | 0.912785 |
Target: 5'- uGGACGG-GAcGUgAGCGGGGGccCGAGCg -3' miRNA: 3'- -CCUGUCaCU-CG-UCGUCCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 147565 | 0.76 | 0.676427 |
Target: 5'- cGGCGG-GAGCAGCGGGGGcggCGGGg -3' miRNA: 3'- cCUGUCaCUCGUCGUCCUCaa-GCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 150490 | 0.68 | 0.969479 |
Target: 5'- -cGCGGUG-GCAGCuugGGGGGUgaGGGCa -3' miRNA: 3'- ccUGUCACuCGUCG---UCCUCAagCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 158615 | 0.67 | 0.9774 |
Target: 5'- uGGACguGGUgGGGguGCAGGuGUccgaaGAGCa -3' miRNA: 3'- -CCUG--UCA-CUCguCGUCCuCAag---CUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 162387 | 0.73 | 0.826742 |
Target: 5'- uGGCGGUGgcGGCGGCGGGAGcggCGgucAGCa -3' miRNA: 3'- cCUGUCAC--UCGUCGUCCUCaa-GC---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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