miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 230097 0.68 0.974695
Target:  5'- gGGGUGGUGAGCGGguucccaCAGGAGUcUCuGGCg -3'
miRNA:   3'- -CCUGUCACUCGUC-------GUCCUCA-AGcUCG- -5'
29741 3' -53.2 NC_006273.1 + 218594 0.67 0.982555
Target:  5'- aGACGGUaGAuuucaccggcuagacGCuGCAGGGGcggCGAGCg -3'
miRNA:   3'- cCUGUCA-CU---------------CGuCGUCCUCaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 208473 0.68 0.965173
Target:  5'- cGGGC-GUGAGCAuCAGGAGUguggugugauagaUGAGUg -3'
miRNA:   3'- -CCUGuCACUCGUcGUCCUCAa------------GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 203978 0.68 0.959751
Target:  5'- aGACcucGGUGAGCcGCGGcGA-UUCGGGCg -3'
miRNA:   3'- cCUG---UCACUCGuCGUC-CUcAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 203144 0.72 0.85873
Target:  5'- -cGCGGUG-GCAGCGGGGGUgguggggaUCG-GCa -3'
miRNA:   3'- ccUGUCACuCGUCGUCCUCA--------AGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 200310 0.7 0.912785
Target:  5'- uGGAUAgcGUGAGCGGCAcGGGGgcgUCGuGa -3'
miRNA:   3'- -CCUGU--CACUCGUCGU-CCUCa--AGCuCg -5'
29741 3' -53.2 NC_006273.1 + 197434 1.15 0.003285
Target:  5'- cGGACAGUGAGCAGCAGGAGUUCGAGCa -3'
miRNA:   3'- -CCUGUCACUCGUCGUCCUCAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 197340 0.66 0.992216
Target:  5'- uGGACcGcGAGCAGUGGGAGcggcCGcGCu -3'
miRNA:   3'- -CCUGuCaCUCGUCGUCCUCaa--GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 193321 0.71 0.900607
Target:  5'- cGACAGUcGAugugugguagccGCAGCAGGugaGGUUgGGGCg -3'
miRNA:   3'- cCUGUCA-CU------------CGUCGUCC---UCAAgCUCG- -5'
29741 3' -53.2 NC_006273.1 + 189965 0.66 0.992216
Target:  5'- cGGC-GUGGGCGGCucgcGGAGacUGGGCu -3'
miRNA:   3'- cCUGuCACUCGUCGu---CCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 188430 0.68 0.97495
Target:  5'- aGGGCGGUGGGUggaacAGCAGGuuguaGGUggUGAGg -3'
miRNA:   3'- -CCUGUCACUCG-----UCGUCC-----UCAa-GCUCg -5'
29741 3' -53.2 NC_006273.1 + 182586 0.66 0.98856
Target:  5'- uGACGGUGAGaacucGGAGacCGAGCg -3'
miRNA:   3'- cCUGUCACUCgucguCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 175164 0.67 0.9774
Target:  5'- uGGACGcGUGAGUAGCGGuc---UGAGCa -3'
miRNA:   3'- -CCUGU-CACUCGUCGUCcucaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 171743 0.69 0.956081
Target:  5'- gGGGCAGcaUGAuagGC-GCGGGAGgcaCGGGCg -3'
miRNA:   3'- -CCUGUC--ACU---CGuCGUCCUCaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 167648 0.66 0.991118
Target:  5'- aGACuGUGAGCGGCGgcgcaacggcGGGGU-CG-GCc -3'
miRNA:   3'- cCUGuCACUCGUCGU----------CCUCAaGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 166149 0.66 0.989902
Target:  5'- uGGGCGGgagGAcGC-GUGGGAGcgCGGGUg -3'
miRNA:   3'- -CCUGUCa--CU-CGuCGUCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 163052 0.67 0.983693
Target:  5'- cGGGCGa-GAcGguGCAGGAGUcCGAGg -3'
miRNA:   3'- -CCUGUcaCU-CguCGUCCUCAaGCUCg -5'
29741 3' -53.2 NC_006273.1 + 163004 0.69 0.956081
Target:  5'- cGGCAGcUGcGGCGGUAGGAcacgCGGGCg -3'
miRNA:   3'- cCUGUC-AC-UCGUCGUCCUcaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 162387 0.73 0.826742
Target:  5'- uGGCGGUGgcGGCGGCGGGAGcggCGgucAGCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCCUCaa-GC---UCG- -5'
29741 3' -53.2 NC_006273.1 + 158615 0.67 0.9774
Target:  5'- uGGACguGGUgGGGguGCAGGuGUccgaaGAGCa -3'
miRNA:   3'- -CCUG--UCA-CUCguCGUCCuCAag---CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.