miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 230097 0.68 0.974695
Target:  5'- gGGGUGGUGAGCGGguucccaCAGGAGUcUCuGGCg -3'
miRNA:   3'- -CCUGUCACUCGUC-------GUCCUCA-AGcUCG- -5'
29741 3' -53.2 NC_006273.1 + 112227 0.68 0.959751
Target:  5'- cGGCGGUGGcaaugcGCGGCGGGGGcuggcgCGAGg -3'
miRNA:   3'- cCUGUCACU------CGUCGUCCUCaa----GCUCg -5'
29741 3' -53.2 NC_006273.1 + 72680 0.68 0.963204
Target:  5'- aGGcACGGcGAGCuGguGGGGUgaagcaCGGGCa -3'
miRNA:   3'- -CC-UGUCaCUCGuCguCCUCAa-----GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 94231 0.68 0.963204
Target:  5'- cGGcGCAGUccGCGGCAGG-GUUCcGGCc -3'
miRNA:   3'- -CC-UGUCAcuCGUCGUCCuCAAGcUCG- -5'
29741 3' -53.2 NC_006273.1 + 208473 0.68 0.965173
Target:  5'- cGGGC-GUGAGCAuCAGGAGUguggugugauagaUGAGUg -3'
miRNA:   3'- -CCUGuCACUCGUcGUCCUCAa------------GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 150490 0.68 0.969479
Target:  5'- -cGCGGUG-GCAGCuugGGGGGUgaGGGCa -3'
miRNA:   3'- ccUGUCACuCGUCG---UCCUCAagCUCG- -5'
29741 3' -53.2 NC_006273.1 + 39175 0.68 0.969479
Target:  5'- cGGCGGUgcuccGAGCGGCGuugcGGGGUUgGAGg -3'
miRNA:   3'- cCUGUCA-----CUCGUCGU----CCUCAAgCUCg -5'
29741 3' -53.2 NC_006273.1 + 47441 0.68 0.969479
Target:  5'- cGGACGcccGcGAGC-GCGGcGAGUUCGGGg -3'
miRNA:   3'- -CCUGU---CaCUCGuCGUC-CUCAAGCUCg -5'
29741 3' -53.2 NC_006273.1 + 7705 0.68 0.972312
Target:  5'- cGGCAGUGgccgcGGCAGCGgGGAGga-GAGg -3'
miRNA:   3'- cCUGUCAC-----UCGUCGU-CCUCaagCUCg -5'
29741 3' -53.2 NC_006273.1 + 76273 0.68 0.959751
Target:  5'- cGGCGGUGGcacCAGCGGGgGGUUCagcgaGAGCa -3'
miRNA:   3'- cCUGUCACUc--GUCGUCC-UCAAG-----CUCG- -5'
29741 3' -53.2 NC_006273.1 + 171743 0.69 0.956081
Target:  5'- gGGGCAGcaUGAuagGC-GCGGGAGgcaCGGGCg -3'
miRNA:   3'- -CCUGUC--ACU---CGuCGUCCUCaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 124101 0.69 0.948074
Target:  5'- aGGAaAGUGAGCGGCGGcgucgacaGAGcUCG-GCg -3'
miRNA:   3'- -CCUgUCACUCGUCGUC--------CUCaAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 1195 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 162387 0.73 0.826742
Target:  5'- uGGCGGUGgcGGCGGCGGGAGcggCGgucAGCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCCUCaa-GC---UCG- -5'
29741 3' -53.2 NC_006273.1 + 84596 0.72 0.843111
Target:  5'- uGACuGUGAGUAGCAGaAGUUccaCGAGUa -3'
miRNA:   3'- cCUGuCACUCGUCGUCcUCAA---GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 53909 0.72 0.857968
Target:  5'- cGACGGUGuugcuggaggucuGGCGGCAGcAGUacacgUCGAGCg -3'
miRNA:   3'- cCUGUCAC-------------UCGUCGUCcUCA-----AGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 54932 0.72 0.85873
Target:  5'- aGGGCGGUGGGCuGCAGucGGGUgguggCG-GCg -3'
miRNA:   3'- -CCUGUCACUCGuCGUC--CUCAa----GCuCG- -5'
29741 3' -53.2 NC_006273.1 + 109710 0.71 0.879941
Target:  5'- gGGACGGUG-GCAucggggaagagacGCgugAGGcGUUCGAGCg -3'
miRNA:   3'- -CCUGUCACuCGU-------------CG---UCCuCAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 193321 0.71 0.900607
Target:  5'- cGACAGUcGAugugugguagccGCAGCAGGugaGGUUgGGGCg -3'
miRNA:   3'- cCUGUCA-CU------------CGUCGUCC---UCAAgCUCG- -5'
29741 3' -53.2 NC_006273.1 + 99833 0.7 0.924035
Target:  5'- cGACGGUG-GCugGGCGGGAGgagCG-GCg -3'
miRNA:   3'- cCUGUCACuCG--UCGUCCUCaa-GCuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.