miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 3' -53.2 NC_006273.1 + 197434 1.15 0.003285
Target:  5'- cGGACAGUGAGCAGCAGGAGUUCGAGCa -3'
miRNA:   3'- -CCUGUCACUCGUCGUCCUCAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 158615 0.67 0.9774
Target:  5'- uGGACguGGUgGGGguGCAGGuGUccgaaGAGCa -3'
miRNA:   3'- -CCUG--UCA-CUCguCGUCCuCAag---CUCG- -5'
29741 3' -53.2 NC_006273.1 + 71858 0.67 0.985463
Target:  5'- cGGGgAG-GAGCAGCuGGuGuUUCGAcuGCg -3'
miRNA:   3'- -CCUgUCaCUCGUCGuCCuC-AAGCU--CG- -5'
29741 3' -53.2 NC_006273.1 + 189965 0.66 0.992216
Target:  5'- cGGC-GUGGGCGGCucgcGGAGacUGGGCu -3'
miRNA:   3'- cCUGuCACUCGUCGu---CCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 141106 0.71 0.880641
Target:  5'- aGGGCGG-GAGgcaGGCGGGAG--CGGGCg -3'
miRNA:   3'- -CCUGUCaCUCg--UCGUCCUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 200310 0.7 0.912785
Target:  5'- uGGAUAgcGUGAGCGGCAcGGGGgcgUCGuGa -3'
miRNA:   3'- -CCUGU--CACUCGUCGU-CCUCa--AGCuCg -5'
29741 3' -53.2 NC_006273.1 + 56917 0.69 0.948074
Target:  5'- cGACAGUGgcGGCAGCAGcccGUUUG-GCa -3'
miRNA:   3'- cCUGUCAC--UCGUCGUCcu-CAAGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 140260 0.69 0.955321
Target:  5'- cGGGCGGaguuuuuuugggGAGCAGUGGGGGagggGAGCg -3'
miRNA:   3'- -CCUGUCa-----------CUCGUCGUCCUCaag-CUCG- -5'
29741 3' -53.2 NC_006273.1 + 203978 0.68 0.959751
Target:  5'- aGACcucGGUGAGCcGCGGcGA-UUCGGGCg -3'
miRNA:   3'- cCUG---UCACUCGuCGUC-CUcAAGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 175164 0.67 0.9774
Target:  5'- uGGACGcGUGAGUAGCGGuc---UGAGCa -3'
miRNA:   3'- -CCUGU-CACUCGUCGUCcucaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 64080 0.68 0.966445
Target:  5'- cGGcCAucaGAGCAGCGGcGGggCGAGCa -3'
miRNA:   3'- -CCuGUca-CUCGUCGUCcUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 163004 0.69 0.956081
Target:  5'- cGGCAGcUGcGGCGGUAGGAcacgCGGGCg -3'
miRNA:   3'- cCUGUC-AC-UCGUCGUCCUcaa-GCUCG- -5'
29741 3' -53.2 NC_006273.1 + 147565 0.76 0.676427
Target:  5'- cGGCGG-GAGCAGCGGGGGcggCGGGg -3'
miRNA:   3'- cCUGUCaCUCGUCGUCCUCaa-GCUCg -5'
29741 3' -53.2 NC_006273.1 + 188430 0.68 0.97495
Target:  5'- aGGGCGGUGGGUggaacAGCAGGuuguaGGUggUGAGg -3'
miRNA:   3'- -CCUGUCACUCG-----UCGUCC-----UCAa-GCUCg -5'
29741 3' -53.2 NC_006273.1 + 41133 0.74 0.782923
Target:  5'- gGGACGGgGAGUuGCGGGAuggCGAGCu -3'
miRNA:   3'- -CCUGUCaCUCGuCGUCCUcaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 140946 0.69 0.956081
Target:  5'- cGGAUGGgGGGUcgAGCGGGGGga-GGGCa -3'
miRNA:   3'- -CCUGUCaCUCG--UCGUCCUCaagCUCG- -5'
29741 3' -53.2 NC_006273.1 + 144327 0.68 0.97495
Target:  5'- cGGCGGUGGGCuGuCAGGcGUcCGAGa -3'
miRNA:   3'- cCUGUCACUCGuC-GUCCuCAaGCUCg -5'
29741 3' -53.2 NC_006273.1 + 87697 0.67 0.983693
Target:  5'- uGGCGGUGGuGCAGCGGcGGc-UGAGCg -3'
miRNA:   3'- cCUGUCACU-CGUCGUCcUCaaGCUCG- -5'
29741 3' -53.2 NC_006273.1 + 203144 0.72 0.85873
Target:  5'- -cGCGGUG-GCAGCGGGGGUgguggggaUCG-GCa -3'
miRNA:   3'- ccUGUCACuCGUCGUCCUCA--------AGCuCG- -5'
29741 3' -53.2 NC_006273.1 + 145587 0.7 0.912785
Target:  5'- uGGACGG-GAcGUgAGCGGGGGccCGAGCg -3'
miRNA:   3'- -CCUGUCaCU-CG-UCGUCCUCaaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.