Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29741 | 3' | -53.2 | NC_006273.1 | + | 64080 | 0.68 | 0.966445 |
Target: 5'- cGGcCAucaGAGCAGCGGcGGggCGAGCa -3' miRNA: 3'- -CCuGUca-CUCGUCGUCcUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 70675 | 0.66 | 0.991118 |
Target: 5'- -cACGGUG-GCGGCGguGGAGggCGcGCg -3' miRNA: 3'- ccUGUCACuCGUCGU--CCUCaaGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 71858 | 0.67 | 0.985463 |
Target: 5'- cGGGgAG-GAGCAGCuGGuGuUUCGAcuGCg -3' miRNA: 3'- -CCUgUCaCUCGUCGuCCuC-AAGCU--CG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 79879 | 0.68 | 0.96613 |
Target: 5'- uGGGCAGacUGAGCAcguugucGCuGGuGUagcccUCGAGCg -3' miRNA: 3'- -CCUGUC--ACUCGU-------CGuCCuCA-----AGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 189965 | 0.66 | 0.992216 |
Target: 5'- cGGC-GUGGGCGGCucgcGGAGacUGGGCu -3' miRNA: 3'- cCUGuCACUCGUCGu---CCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 203978 | 0.68 | 0.959751 |
Target: 5'- aGACcucGGUGAGCcGCGGcGA-UUCGGGCg -3' miRNA: 3'- cCUG---UCACUCGuCGUC-CUcAAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 163004 | 0.69 | 0.956081 |
Target: 5'- cGGCAGcUGcGGCGGUAGGAcacgCGGGCg -3' miRNA: 3'- cCUGUC-AC-UCGUCGUCCUcaa-GCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 109710 | 0.71 | 0.879941 |
Target: 5'- gGGACGGUG-GCAucggggaagagacGCgugAGGcGUUCGAGCg -3' miRNA: 3'- -CCUGUCACuCGU-------------CG---UCCuCAAGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 197340 | 0.66 | 0.992216 |
Target: 5'- uGGACcGcGAGCAGUGGGAGcggcCGcGCu -3' miRNA: 3'- -CCUGuCaCUCGUCGUCCUCaa--GCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 167648 | 0.66 | 0.991118 |
Target: 5'- aGACuGUGAGCGGCGgcgcaacggcGGGGU-CG-GCc -3' miRNA: 3'- cCUGuCACUCGUCGU----------CCUCAaGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 94231 | 0.68 | 0.963204 |
Target: 5'- cGGcGCAGUccGCGGCAGG-GUUCcGGCc -3' miRNA: 3'- -CC-UGUCAcuCGUCGUCCuCAAGcUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 72680 | 0.68 | 0.963204 |
Target: 5'- aGGcACGGcGAGCuGguGGGGUgaagcaCGGGCa -3' miRNA: 3'- -CC-UGUCaCUCGuCguCCUCAa-----GCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 112227 | 0.68 | 0.959751 |
Target: 5'- cGGCGGUGGcaaugcGCGGCGGGGGcuggcgCGAGg -3' miRNA: 3'- cCUGUCACU------CGUCGUCCUCaa----GCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 76273 | 0.68 | 0.959751 |
Target: 5'- cGGCGGUGGcacCAGCGGGgGGUUCagcgaGAGCa -3' miRNA: 3'- cCUGUCACUc--GUCGUCC-UCAAG-----CUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 54932 | 0.72 | 0.85873 |
Target: 5'- aGGGCGGUGGGCuGCAGucGGGUgguggCG-GCg -3' miRNA: 3'- -CCUGUCACUCGuCGUC--CUCAa----GCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 19726 | 0.67 | 0.983508 |
Target: 5'- cGGccGCAGUGGGCccacGGCuuggacauugucgAGGAGgaCGAGUg -3' miRNA: 3'- -CC--UGUCACUCG----UCG-------------UCCUCaaGCUCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 102303 | 0.67 | 0.983693 |
Target: 5'- uGACAG-GGGCAacGCGGGcAGgUCGuGCg -3' miRNA: 3'- cCUGUCaCUCGU--CGUCC-UCaAGCuCG- -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 163052 | 0.67 | 0.983693 |
Target: 5'- cGGGCGa-GAcGguGCAGGAGUcCGAGg -3' miRNA: 3'- -CCUGUcaCU-CguCGUCCUCAaGCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 139395 | 0.66 | 0.98856 |
Target: 5'- ---gAGUGGGcCAGCccGAGUUCGGGg -3' miRNA: 3'- ccugUCACUC-GUCGucCUCAAGCUCg -5' |
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29741 | 3' | -53.2 | NC_006273.1 | + | 166149 | 0.66 | 0.989902 |
Target: 5'- uGGGCGGgagGAcGC-GUGGGAGcgCGGGUg -3' miRNA: 3'- -CCUGUCa--CU-CGuCGUCCUCaaGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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