miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 5' -56.7 NC_006273.1 + 187144 0.66 0.946468
Target:  5'- uGGGCUCGCCUCCgUGCggaCGCcguuucgugcaGACGCu- -3'
miRNA:   3'- -CUUGAGCGGAGG-GCGa--GUG-----------UUGCGca -5'
29741 5' -56.7 NC_006273.1 + 203548 0.66 0.946468
Target:  5'- -----gGCgUCCUGCUgacgCACGACGCGUa -3'
miRNA:   3'- cuugagCGgAGGGCGA----GUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 72956 0.66 0.946468
Target:  5'- aGAGCgccgucacCGCCUCCCGCUCggccugccgACAcaccagccauucGCGCa- -3'
miRNA:   3'- -CUUGa-------GCGGAGGGCGAG---------UGU------------UGCGca -5'
29741 5' -56.7 NC_006273.1 + 123008 0.66 0.946468
Target:  5'- cGAGCUCGCaCUgCUgGUUCaACAGCGCc- -3'
miRNA:   3'- -CUUGAGCG-GA-GGgCGAG-UGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 112328 0.66 0.942128
Target:  5'- --uUUCGCCUgCgGCU-GCGACGCGa -3'
miRNA:   3'- cuuGAGCGGAgGgCGAgUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 92295 0.66 0.942128
Target:  5'- aGGGCUCGCUgaggCUGUaaucgCACAGCGCGg -3'
miRNA:   3'- -CUUGAGCGGag--GGCGa----GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 19036 0.66 0.942128
Target:  5'- aGAACUgGgCCUUCCccuCUCACAGCGuCGa -3'
miRNA:   3'- -CUUGAgC-GGAGGGc--GAGUGUUGC-GCa -5'
29741 5' -56.7 NC_006273.1 + 151250 0.66 0.942128
Target:  5'- --cCUCGUCUgCCGUgaucaagcggCGCGGCGCGg -3'
miRNA:   3'- cuuGAGCGGAgGGCGa---------GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 198657 0.66 0.934721
Target:  5'- cGAGCUgugccgccgcucgcgCGCCU-CCGCUCGCGGcCGCu- -3'
miRNA:   3'- -CUUGA---------------GCGGAgGGCGAGUGUU-GCGca -5'
29741 5' -56.7 NC_006273.1 + 123827 0.66 0.93278
Target:  5'- aGACUCGCCgUUCGCUUcccccaauuGCAGCgGCGUa -3'
miRNA:   3'- cUUGAGCGGaGGGCGAG---------UGUUG-CGCA- -5'
29741 5' -56.7 NC_006273.1 + 92840 0.66 0.93278
Target:  5'- aGAGCUCGCaga--GCUCGgGAUGCGUa -3'
miRNA:   3'- -CUUGAGCGgagggCGAGUgUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 71667 0.66 0.93278
Target:  5'- aAAC-CGCCgcgcgCCUGCUgCACAAUGUGg -3'
miRNA:   3'- cUUGaGCGGa----GGGCGA-GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 141104 0.66 0.93278
Target:  5'- -uGCUggaCGCuCUCUCGCUgaACGACGCGg -3'
miRNA:   3'- cuUGA---GCG-GAGGGCGAg-UGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 71135 0.66 0.93278
Target:  5'- --uUUCGCCUCgCCGCcuaUCACggUGCu- -3'
miRNA:   3'- cuuGAGCGGAG-GGCG---AGUGuuGCGca -5'
29741 5' -56.7 NC_006273.1 + 30640 0.66 0.93278
Target:  5'- --uUUCGgCUCCCGCaCACAgacgACGCGc -3'
miRNA:   3'- cuuGAGCgGAGGGCGaGUGU----UGCGCa -5'
29741 5' -56.7 NC_006273.1 + 163329 0.66 0.93278
Target:  5'- cGAGCUCGUacaCUGCUCGCucUGCGg -3'
miRNA:   3'- -CUUGAGCGgagGGCGAGUGuuGCGCa -5'
29741 5' -56.7 NC_006273.1 + 123299 0.66 0.932289
Target:  5'- -uGC-CGCCUUCCacucgauGCcagCACAGCGCGUg -3'
miRNA:   3'- cuUGaGCGGAGGG-------CGa--GUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 133818 0.66 0.927769
Target:  5'- cGAGCgcgaaCGCCgcgCCCGUcgcgCACGGCGCu- -3'
miRNA:   3'- -CUUGa----GCGGa--GGGCGa---GUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 119038 0.66 0.927769
Target:  5'- ---gUCGCUaCCCGCUCACcgaGCGa -3'
miRNA:   3'- cuugAGCGGaGGGCGAGUGuugCGCa -5'
29741 5' -56.7 NC_006273.1 + 42150 0.66 0.927255
Target:  5'- --cCUCGUcguccacccguuuCUgCCGCUCGCGACGCu- -3'
miRNA:   3'- cuuGAGCG-------------GAgGGCGAGUGUUGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.