Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29741 | 5' | -56.7 | NC_006273.1 | + | 197468 | 1.08 | 0.004613 |
Target: 5'- cGAACUCGCCUCCCGCUCACAACGCGUg -3' miRNA: 3'- -CUUGAGCGGAGGGCGAGUGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 27012 | 0.74 | 0.541623 |
Target: 5'- gGAAaa-GCCUCCgacgaGCUCGCGGCGCGUa -3' miRNA: 3'- -CUUgagCGGAGGg----CGAGUGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 147591 | 0.74 | 0.570809 |
Target: 5'- gGAGC-CGCCg-CgGCUCACGACGCGg -3' miRNA: 3'- -CUUGaGCGGagGgCGAGUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 163386 | 0.73 | 0.59048 |
Target: 5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3' miRNA: 3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 105902 | 0.72 | 0.669758 |
Target: 5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3' miRNA: 3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 187944 | 0.71 | 0.708943 |
Target: 5'- cGAACUCGCCg--CGCUCGCGG-GCGUc -3' miRNA: 3'- -CUUGAGCGGaggGCGAGUGUUgCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 83552 | 0.71 | 0.734871 |
Target: 5'- cGAGCUgCGCgaCCUGCUCACGcgcuacgccucgcgGCGCGa -3' miRNA: 3'- -CUUGA-GCGgaGGGCGAGUGU--------------UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 131444 | 0.71 | 0.728201 |
Target: 5'- uGGGCUCGcCCUUCCGU---CAGCGCGUg -3' miRNA: 3'- -CUUGAGC-GGAGGGCGaguGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141446 | 0.7 | 0.79796 |
Target: 5'- aGGGCgCGCCUCCCGCggguccuggcccgCGCAuGCGCa- -3' miRNA: 3'- -CUUGaGCGGAGGGCGa------------GUGU-UGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 193033 | 0.69 | 0.842798 |
Target: 5'- aGugUCGCCggaCCUGCUCGuCAGCaGCGa -3' miRNA: 3'- cUugAGCGGa--GGGCGAGU-GUUG-CGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 219954 | 0.69 | 0.818466 |
Target: 5'- -cGCUCGCgCUCgcgUCGCUCaucggGCAACGCGg -3' miRNA: 3'- cuUGAGCG-GAG---GGCGAG-----UGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 80536 | 0.69 | 0.842798 |
Target: 5'- aGGCguagGCCgCCUGCUCGCAGgGCGUg -3' miRNA: 3'- cUUGag--CGGaGGGCGAGUGUUgCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141678 | 0.69 | 0.834859 |
Target: 5'- cGGGCUCGCUcggCCuCGCUCGgAACGaCGa -3' miRNA: 3'- -CUUGAGCGGa--GG-GCGAGUgUUGC-GCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 170651 | 0.68 | 0.886446 |
Target: 5'- cAACUCGCCUCuaGCcgCGCGuccagACGCGc -3' miRNA: 3'- cUUGAGCGGAGggCGa-GUGU-----UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 199334 | 0.68 | 0.879673 |
Target: 5'- uGACUCGCuCUCgUCGCUCuauCuGCGCGg -3' miRNA: 3'- cUUGAGCG-GAG-GGCGAGu--GuUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 56725 | 0.68 | 0.879673 |
Target: 5'- -----aGUCUUCCGUUCACAACGUGc -3' miRNA: 3'- cuugagCGGAGGGCGAGUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 61901 | 0.68 | 0.879673 |
Target: 5'- uGGAC-CGCUUCCUGCgacaccagCACGACgGCGg -3' miRNA: 3'- -CUUGaGCGGAGGGCGa-------GUGUUG-CGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 72818 | 0.68 | 0.872693 |
Target: 5'- -cGCUCGCCUgCUCGCUCgu-GCGCu- -3' miRNA: 3'- cuUGAGCGGA-GGGCGAGuguUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 192171 | 0.67 | 0.905481 |
Target: 5'- cGGCcCGCCUgCCGaUCGCGACGuCGUg -3' miRNA: 3'- cUUGaGCGGAgGGCgAGUGUUGC-GCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 85914 | 0.67 | 0.905481 |
Target: 5'- cGACaUCGCCUCCCGUcCACGcAgGUGa -3' miRNA: 3'- cUUG-AGCGGAGGGCGaGUGU-UgCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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