miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 5' -56.7 NC_006273.1 + 197468 1.08 0.004613
Target:  5'- cGAACUCGCCUCCCGCUCACAACGCGUg -3'
miRNA:   3'- -CUUGAGCGGAGGGCGAGUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 27012 0.74 0.541623
Target:  5'- gGAAaa-GCCUCCgacgaGCUCGCGGCGCGUa -3'
miRNA:   3'- -CUUgagCGGAGGg----CGAGUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 147591 0.74 0.570809
Target:  5'- gGAGC-CGCCg-CgGCUCACGACGCGg -3'
miRNA:   3'- -CUUGaGCGGagGgCGAGUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 163386 0.73 0.59048
Target:  5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3'
miRNA:   3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 105902 0.72 0.669758
Target:  5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3'
miRNA:   3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5'
29741 5' -56.7 NC_006273.1 + 187944 0.71 0.708943
Target:  5'- cGAACUCGCCg--CGCUCGCGG-GCGUc -3'
miRNA:   3'- -CUUGAGCGGaggGCGAGUGUUgCGCA- -5'
29741 5' -56.7 NC_006273.1 + 131444 0.71 0.728201
Target:  5'- uGGGCUCGcCCUUCCGU---CAGCGCGUg -3'
miRNA:   3'- -CUUGAGC-GGAGGGCGaguGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 83552 0.71 0.734871
Target:  5'- cGAGCUgCGCgaCCUGCUCACGcgcuacgccucgcgGCGCGa -3'
miRNA:   3'- -CUUGA-GCGgaGGGCGAGUGU--------------UGCGCa -5'
29741 5' -56.7 NC_006273.1 + 141446 0.7 0.79796
Target:  5'- aGGGCgCGCCUCCCGCggguccuggcccgCGCAuGCGCa- -3'
miRNA:   3'- -CUUGaGCGGAGGGCGa------------GUGU-UGCGca -5'
29741 5' -56.7 NC_006273.1 + 219954 0.69 0.818466
Target:  5'- -cGCUCGCgCUCgcgUCGCUCaucggGCAACGCGg -3'
miRNA:   3'- cuUGAGCG-GAG---GGCGAG-----UGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 141678 0.69 0.834859
Target:  5'- cGGGCUCGCUcggCCuCGCUCGgAACGaCGa -3'
miRNA:   3'- -CUUGAGCGGa--GG-GCGAGUgUUGC-GCa -5'
29741 5' -56.7 NC_006273.1 + 80536 0.69 0.842798
Target:  5'- aGGCguagGCCgCCUGCUCGCAGgGCGUg -3'
miRNA:   3'- cUUGag--CGGaGGGCGAGUGUUgCGCA- -5'
29741 5' -56.7 NC_006273.1 + 193033 0.69 0.842798
Target:  5'- aGugUCGCCggaCCUGCUCGuCAGCaGCGa -3'
miRNA:   3'- cUugAGCGGa--GGGCGAGU-GUUG-CGCa -5'
29741 5' -56.7 NC_006273.1 + 72818 0.68 0.872693
Target:  5'- -cGCUCGCCUgCUCGCUCgu-GCGCu- -3'
miRNA:   3'- cuUGAGCGGA-GGGCGAGuguUGCGca -5'
29741 5' -56.7 NC_006273.1 + 199334 0.68 0.879673
Target:  5'- uGACUCGCuCUCgUCGCUCuauCuGCGCGg -3'
miRNA:   3'- cUUGAGCG-GAG-GGCGAGu--GuUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 56725 0.68 0.879673
Target:  5'- -----aGUCUUCCGUUCACAACGUGc -3'
miRNA:   3'- cuugagCGGAGGGCGAGUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 61901 0.68 0.879673
Target:  5'- uGGAC-CGCUUCCUGCgacaccagCACGACgGCGg -3'
miRNA:   3'- -CUUGaGCGGAGGGCGa-------GUGUUG-CGCa -5'
29741 5' -56.7 NC_006273.1 + 170651 0.68 0.886446
Target:  5'- cAACUCGCCUCuaGCcgCGCGuccagACGCGc -3'
miRNA:   3'- cUUGAGCGGAGggCGa-GUGU-----UGCGCa -5'
29741 5' -56.7 NC_006273.1 + 42104 0.67 0.904878
Target:  5'- cGAGCUucUGCCUCaCCGCuguuuccgaguacUCACAACGUc- -3'
miRNA:   3'- -CUUGA--GCGGAG-GGCG-------------AGUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 85914 0.67 0.905481
Target:  5'- cGACaUCGCCUCCCGUcCACGcAgGUGa -3'
miRNA:   3'- cUUG-AGCGGAGGGCGaGUGU-UgCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.