Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29741 | 5' | -56.7 | NC_006273.1 | + | 187944 | 0.71 | 0.708943 |
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Target: 5'- cGAACUCGCCg--CGCUCGCGG-GCGUc -3' miRNA: 3'- -CUUGAGCGGaggGCGAGUGUUgCGCA- -5' |
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| 29741 | 5' | -56.7 | NC_006273.1 | + | 105902 | 0.72 | 0.669758 |
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Target: 5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3' miRNA: 3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5' |
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| 29741 | 5' | -56.7 | NC_006273.1 | + | 163386 | 0.73 | 0.59048 |
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Target: 5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3' miRNA: 3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5' |
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| 29741 | 5' | -56.7 | NC_006273.1 | + | 147591 | 0.74 | 0.570809 |
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Target: 5'- gGAGC-CGCCg-CgGCUCACGACGCGg -3' miRNA: 3'- -CUUGaGCGGagGgCGAGUGUUGCGCa -5' |
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| 29741 | 5' | -56.7 | NC_006273.1 | + | 27012 | 0.74 | 0.541623 |
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Target: 5'- gGAAaa-GCCUCCgacgaGCUCGCGGCGCGUa -3' miRNA: 3'- -CUUgagCGGAGGg----CGAGUGUUGCGCA- -5' |
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| 29741 | 5' | -56.7 | NC_006273.1 | + | 197468 | 1.08 | 0.004613 |
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Target: 5'- cGAACUCGCCUCCCGCUCACAACGCGUg -3' miRNA: 3'- -CUUGAGCGGAGGGCGAGUGUUGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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