miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 5' -56.7 NC_006273.1 + 19036 0.66 0.942128
Target:  5'- aGAACUgGgCCUUCCccuCUCACAGCGuCGa -3'
miRNA:   3'- -CUUGAgC-GGAGGGc--GAGUGUUGC-GCa -5'
29741 5' -56.7 NC_006273.1 + 25493 0.67 0.917073
Target:  5'- ----gCGCCUUCUGCUaCGCGGCGCc- -3'
miRNA:   3'- cuugaGCGGAGGGCGA-GUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 27012 0.74 0.541623
Target:  5'- gGAAaa-GCCUCCgacgaGCUCGCGGCGCGUa -3'
miRNA:   3'- -CUUgagCGGAGGg----CGAGUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 30640 0.66 0.93278
Target:  5'- --uUUCGgCUCCCGCaCACAgacgACGCGc -3'
miRNA:   3'- cuuGAGCgGAGGGCGaGUGU----UGCGCa -5'
29741 5' -56.7 NC_006273.1 + 42104 0.67 0.904878
Target:  5'- cGAGCUucUGCCUCaCCGCuguuuccgaguacUCACAACGUc- -3'
miRNA:   3'- -CUUGA--GCGGAG-GGCG-------------AGUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 42150 0.66 0.927255
Target:  5'- --cCUCGUcguccacccguuuCUgCCGCUCGCGACGCu- -3'
miRNA:   3'- cuuGAGCG-------------GAgGGCGAGUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 56725 0.68 0.879673
Target:  5'- -----aGUCUUCCGUUCACAACGUGc -3'
miRNA:   3'- cuugagCGGAGGGCGAGUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 61901 0.68 0.879673
Target:  5'- uGGAC-CGCUUCCUGCgacaccagCACGACgGCGg -3'
miRNA:   3'- -CUUGaGCGGAGGGCGa-------GUGUUG-CGCa -5'
29741 5' -56.7 NC_006273.1 + 71135 0.66 0.93278
Target:  5'- --uUUCGCCUCgCCGCcuaUCACggUGCu- -3'
miRNA:   3'- cuuGAGCGGAG-GGCG---AGUGuuGCGca -5'
29741 5' -56.7 NC_006273.1 + 71667 0.66 0.93278
Target:  5'- aAAC-CGCCgcgcgCCUGCUgCACAAUGUGg -3'
miRNA:   3'- cUUGaGCGGa----GGGCGA-GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 72818 0.68 0.872693
Target:  5'- -cGCUCGCCUgCUCGCUCgu-GCGCu- -3'
miRNA:   3'- cuUGAGCGGA-GGGCGAGuguUGCGca -5'
29741 5' -56.7 NC_006273.1 + 72956 0.66 0.946468
Target:  5'- aGAGCgccgucacCGCCUCCCGCUCggccugccgACAcaccagccauucGCGCa- -3'
miRNA:   3'- -CUUGa-------GCGGAGGGCGAG---------UGU------------UGCGca -5'
29741 5' -56.7 NC_006273.1 + 80536 0.69 0.842798
Target:  5'- aGGCguagGCCgCCUGCUCGCAGgGCGUg -3'
miRNA:   3'- cUUGag--CGGaGGGCGAGUGUUgCGCA- -5'
29741 5' -56.7 NC_006273.1 + 83552 0.71 0.734871
Target:  5'- cGAGCUgCGCgaCCUGCUCACGcgcuacgccucgcgGCGCGa -3'
miRNA:   3'- -CUUGA-GCGgaGGGCGAGUGU--------------UGCGCa -5'
29741 5' -56.7 NC_006273.1 + 85914 0.67 0.905481
Target:  5'- cGACaUCGCCUCCCGUcCACGcAgGUGa -3'
miRNA:   3'- cUUG-AGCGGAGGGCGaGUGU-UgCGCa -5'
29741 5' -56.7 NC_006273.1 + 92295 0.66 0.942128
Target:  5'- aGGGCUCGCUgaggCUGUaaucgCACAGCGCGg -3'
miRNA:   3'- -CUUGAGCGGag--GGCGa----GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 92840 0.66 0.93278
Target:  5'- aGAGCUCGCaga--GCUCGgGAUGCGUa -3'
miRNA:   3'- -CUUGAGCGgagggCGAGUgUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 99332 0.67 0.911388
Target:  5'- -uGCgUCGuCCUCaucuCCGCUCGgAACGCGg -3'
miRNA:   3'- cuUG-AGC-GGAG----GGCGAGUgUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 105902 0.72 0.669758
Target:  5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3'
miRNA:   3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5'
29741 5' -56.7 NC_006273.1 + 112328 0.66 0.942128
Target:  5'- --uUUCGCCUgCgGCU-GCGACGCGa -3'
miRNA:   3'- cuuGAGCGGAgGgCGAgUGUUGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.