Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29741 | 5' | -56.7 | NC_006273.1 | + | 119038 | 0.66 | 0.927769 |
Target: 5'- ---gUCGCUaCCCGCUCACcgaGCGa -3' miRNA: 3'- cuugAGCGGaGGGCGAGUGuugCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 123008 | 0.66 | 0.946468 |
Target: 5'- cGAGCUCGCaCUgCUgGUUCaACAGCGCc- -3' miRNA: 3'- -CUUGAGCG-GA-GGgCGAG-UGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 123299 | 0.66 | 0.932289 |
Target: 5'- -uGC-CGCCUUCCacucgauGCcagCACAGCGCGUg -3' miRNA: 3'- cuUGaGCGGAGGG-------CGa--GUGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 123827 | 0.66 | 0.93278 |
Target: 5'- aGACUCGCCgUUCGCUUcccccaauuGCAGCgGCGUa -3' miRNA: 3'- cUUGAGCGGaGGGCGAG---------UGUUG-CGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 131444 | 0.71 | 0.728201 |
Target: 5'- uGGGCUCGcCCUUCCGU---CAGCGCGUg -3' miRNA: 3'- -CUUGAGC-GGAGGGCGaguGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 133818 | 0.66 | 0.927769 |
Target: 5'- cGAGCgcgaaCGCCgcgCCCGUcgcgCACGGCGCu- -3' miRNA: 3'- -CUUGa----GCGGa--GGGCGa---GUGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141104 | 0.66 | 0.93278 |
Target: 5'- -uGCUggaCGCuCUCUCGCUgaACGACGCGg -3' miRNA: 3'- cuUGA---GCG-GAGGGCGAg-UGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141446 | 0.7 | 0.79796 |
Target: 5'- aGGGCgCGCCUCCCGCggguccuggcccgCGCAuGCGCa- -3' miRNA: 3'- -CUUGaGCGGAGGGCGa------------GUGU-UGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141678 | 0.69 | 0.834859 |
Target: 5'- cGGGCUCGCUcggCCuCGCUCGgAACGaCGa -3' miRNA: 3'- -CUUGAGCGGa--GG-GCGAGUgUUGC-GCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 147591 | 0.74 | 0.570809 |
Target: 5'- gGAGC-CGCCg-CgGCUCACGACGCGg -3' miRNA: 3'- -CUUGaGCGGagGgCGAGUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 151250 | 0.66 | 0.942128 |
Target: 5'- --cCUCGUCUgCCGUgaucaagcggCGCGGCGCGg -3' miRNA: 3'- cuuGAGCGGAgGGCGa---------GUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 158802 | 0.67 | 0.910807 |
Target: 5'- cGAgUCGCCUCCgggcgaggugggCGCUucgagucCACAGCGCGc -3' miRNA: 3'- cUUgAGCGGAGG------------GCGA-------GUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 163329 | 0.66 | 0.93278 |
Target: 5'- cGAGCUCGUacaCUGCUCGCucUGCGg -3' miRNA: 3'- -CUUGAGCGgagGGCGAGUGuuGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 163386 | 0.73 | 0.59048 |
Target: 5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3' miRNA: 3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 170651 | 0.68 | 0.886446 |
Target: 5'- cAACUCGCCUCuaGCcgCGCGuccagACGCGc -3' miRNA: 3'- cUUGAGCGGAGggCGa-GUGU-----UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 173912 | 0.67 | 0.911388 |
Target: 5'- ----aCGCCgaucaCCaggCGCUCACGGCGCGUu -3' miRNA: 3'- cuugaGCGGa----GG---GCGAGUGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 183723 | 0.67 | 0.922533 |
Target: 5'- gGGGCUCaGCCUUCucaCGCUC-CGGCGCa- -3' miRNA: 3'- -CUUGAG-CGGAGG---GCGAGuGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 187144 | 0.66 | 0.946468 |
Target: 5'- uGGGCUCGCCUCCgUGCggaCGCcguuucgugcaGACGCu- -3' miRNA: 3'- -CUUGAGCGGAGG-GCGa--GUG-----------UUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 187944 | 0.71 | 0.708943 |
Target: 5'- cGAACUCGCCg--CGCUCGCGG-GCGUc -3' miRNA: 3'- -CUUGAGCGGaggGCGAGUGUUgCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 192171 | 0.67 | 0.905481 |
Target: 5'- cGGCcCGCCUgCCGaUCGCGACGuCGUg -3' miRNA: 3'- cUUGaGCGGAgGGCgAGUGUUGC-GCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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