miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29741 5' -56.7 NC_006273.1 + 27012 0.74 0.541623
Target:  5'- gGAAaa-GCCUCCgacgaGCUCGCGGCGCGUa -3'
miRNA:   3'- -CUUgagCGGAGGg----CGAGUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 187144 0.66 0.946468
Target:  5'- uGGGCUCGCCUCCgUGCggaCGCcguuucgugcaGACGCu- -3'
miRNA:   3'- -CUUGAGCGGAGG-GCGa--GUG-----------UUGCGca -5'
29741 5' -56.7 NC_006273.1 + 72956 0.66 0.946468
Target:  5'- aGAGCgccgucacCGCCUCCCGCUCggccugccgACAcaccagccauucGCGCa- -3'
miRNA:   3'- -CUUGa-------GCGGAGGGCGAG---------UGU------------UGCGca -5'
29741 5' -56.7 NC_006273.1 + 151250 0.66 0.942128
Target:  5'- --cCUCGUCUgCCGUgaucaagcggCGCGGCGCGg -3'
miRNA:   3'- cuuGAGCGGAgGGCGa---------GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 123827 0.66 0.93278
Target:  5'- aGACUCGCCgUUCGCUUcccccaauuGCAGCgGCGUa -3'
miRNA:   3'- cUUGAGCGGaGGGCGAG---------UGUUG-CGCA- -5'
29741 5' -56.7 NC_006273.1 + 71667 0.66 0.93278
Target:  5'- aAAC-CGCCgcgcgCCUGCUgCACAAUGUGg -3'
miRNA:   3'- cUUGaGCGGa----GGGCGA-GUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 141104 0.66 0.93278
Target:  5'- -uGCUggaCGCuCUCUCGCUgaACGACGCGg -3'
miRNA:   3'- cuUGA---GCG-GAGGGCGAg-UGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 71135 0.66 0.93278
Target:  5'- --uUUCGCCUCgCCGCcuaUCACggUGCu- -3'
miRNA:   3'- cuuGAGCGGAG-GGCG---AGUGuuGCGca -5'
29741 5' -56.7 NC_006273.1 + 123299 0.66 0.932289
Target:  5'- -uGC-CGCCUUCCacucgauGCcagCACAGCGCGUg -3'
miRNA:   3'- cuUGaGCGGAGGG-------CGa--GUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 42150 0.66 0.927255
Target:  5'- --cCUCGUcguccacccguuuCUgCCGCUCGCGACGCu- -3'
miRNA:   3'- cuuGAGCG-------------GAgGGCGAGUGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 147591 0.74 0.570809
Target:  5'- gGAGC-CGCCg-CgGCUCACGACGCGg -3'
miRNA:   3'- -CUUGaGCGGagGgCGAGUGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 219954 0.69 0.818466
Target:  5'- -cGCUCGCgCUCgcgUCGCUCaucggGCAACGCGg -3'
miRNA:   3'- cuUGAGCG-GAG---GGCGAG-----UGUUGCGCa -5'
29741 5' -56.7 NC_006273.1 + 141678 0.69 0.834859
Target:  5'- cGGGCUCGCUcggCCuCGCUCGgAACGaCGa -3'
miRNA:   3'- -CUUGAGCGGa--GG-GCGAGUgUUGC-GCa -5'
29741 5' -56.7 NC_006273.1 + 193033 0.69 0.842798
Target:  5'- aGugUCGCCggaCCUGCUCGuCAGCaGCGa -3'
miRNA:   3'- cUugAGCGGa--GGGCGAGU-GUUG-CGCa -5'
29741 5' -56.7 NC_006273.1 + 61901 0.68 0.879673
Target:  5'- uGGAC-CGCUUCCUGCgacaccagCACGACgGCGg -3'
miRNA:   3'- -CUUGaGCGGAGGGCGa-------GUGUUG-CGCa -5'
29741 5' -56.7 NC_006273.1 + 85914 0.67 0.905481
Target:  5'- cGACaUCGCCUCCCGUcCACGcAgGUGa -3'
miRNA:   3'- cUUG-AGCGGAGGGCGaGUGU-UgCGCa -5'
29741 5' -56.7 NC_006273.1 + 192171 0.67 0.905481
Target:  5'- cGGCcCGCCUgCCGaUCGCGACGuCGUg -3'
miRNA:   3'- cUUGaGCGGAgGGCgAGUGUUGC-GCA- -5'
29741 5' -56.7 NC_006273.1 + 203548 0.66 0.946468
Target:  5'- -----gGCgUCCUGCUgacgCACGACGCGUa -3'
miRNA:   3'- cuugagCGgAGGGCGA----GUGUUGCGCA- -5'
29741 5' -56.7 NC_006273.1 + 163386 0.73 0.59048
Target:  5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3'
miRNA:   3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5'
29741 5' -56.7 NC_006273.1 + 105902 0.72 0.669758
Target:  5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3'
miRNA:   3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.