Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29741 | 5' | -56.7 | NC_006273.1 | + | 25493 | 0.67 | 0.917073 |
Target: 5'- ----gCGCCUUCUGCUaCGCGGCGCc- -3' miRNA: 3'- cuugaGCGGAGGGCGA-GUGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 183723 | 0.67 | 0.922533 |
Target: 5'- gGGGCUCaGCCUUCucaCGCUC-CGGCGCa- -3' miRNA: 3'- -CUUGAG-CGGAGG---GCGAGuGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 119038 | 0.66 | 0.927769 |
Target: 5'- ---gUCGCUaCCCGCUCACcgaGCGa -3' miRNA: 3'- cuugAGCGGaGGGCGAGUGuugCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 133818 | 0.66 | 0.927769 |
Target: 5'- cGAGCgcgaaCGCCgcgCCCGUcgcgCACGGCGCu- -3' miRNA: 3'- -CUUGa----GCGGa--GGGCGa---GUGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 30640 | 0.66 | 0.93278 |
Target: 5'- --uUUCGgCUCCCGCaCACAgacgACGCGc -3' miRNA: 3'- cuuGAGCgGAGGGCGaGUGU----UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 92840 | 0.66 | 0.93278 |
Target: 5'- aGAGCUCGCaga--GCUCGgGAUGCGUa -3' miRNA: 3'- -CUUGAGCGgagggCGAGUgUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 163329 | 0.66 | 0.93278 |
Target: 5'- cGAGCUCGUacaCUGCUCGCucUGCGg -3' miRNA: 3'- -CUUGAGCGgagGGCGAGUGuuGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 198657 | 0.66 | 0.934721 |
Target: 5'- cGAGCUgugccgccgcucgcgCGCCU-CCGCUCGCGGcCGCu- -3' miRNA: 3'- -CUUGA---------------GCGGAgGGCGAGUGUU-GCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 42104 | 0.67 | 0.904878 |
Target: 5'- cGAGCUucUGCCUCaCCGCuguuuccgaguacUCACAACGUc- -3' miRNA: 3'- -CUUGA--GCGGAG-GGCG-------------AGUGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 170651 | 0.68 | 0.886446 |
Target: 5'- cAACUCGCCUCuaGCcgCGCGuccagACGCGc -3' miRNA: 3'- cUUGAGCGGAGggCGa-GUGU-----UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 163386 | 0.73 | 0.59048 |
Target: 5'- cGAGCUCGUCUCCgagaCGCUCuuuggACAGCGCu- -3' miRNA: 3'- -CUUGAGCGGAGG----GCGAG-----UGUUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 105902 | 0.72 | 0.669758 |
Target: 5'- cGAGCUccgaCGCCUCgCGCUCACGcCGCc- -3' miRNA: 3'- -CUUGA----GCGGAGgGCGAGUGUuGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 187944 | 0.71 | 0.708943 |
Target: 5'- cGAACUCGCCg--CGCUCGCGG-GCGUc -3' miRNA: 3'- -CUUGAGCGGaggGCGAGUGUUgCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 131444 | 0.71 | 0.728201 |
Target: 5'- uGGGCUCGcCCUUCCGU---CAGCGCGUg -3' miRNA: 3'- -CUUGAGC-GGAGGGCGaguGUUGCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 83552 | 0.71 | 0.734871 |
Target: 5'- cGAGCUgCGCgaCCUGCUCACGcgcuacgccucgcgGCGCGa -3' miRNA: 3'- -CUUGA-GCGgaGGGCGAGUGU--------------UGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 141446 | 0.7 | 0.79796 |
Target: 5'- aGGGCgCGCCUCCCGCggguccuggcccgCGCAuGCGCa- -3' miRNA: 3'- -CUUGaGCGGAGGGCGa------------GUGU-UGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 80536 | 0.69 | 0.842798 |
Target: 5'- aGGCguagGCCgCCUGCUCGCAGgGCGUg -3' miRNA: 3'- cUUGag--CGGaGGGCGAGUGUUgCGCA- -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 72818 | 0.68 | 0.872693 |
Target: 5'- -cGCUCGCCUgCUCGCUCgu-GCGCu- -3' miRNA: 3'- cuUGAGCGGA-GGGCGAGuguUGCGca -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 56725 | 0.68 | 0.879673 |
Target: 5'- -----aGUCUUCCGUUCACAACGUGc -3' miRNA: 3'- cuugagCGGAGGGCGAGUGUUGCGCa -5' |
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29741 | 5' | -56.7 | NC_006273.1 | + | 199334 | 0.68 | 0.879673 |
Target: 5'- uGACUCGCuCUCgUCGCUCuauCuGCGCGg -3' miRNA: 3'- cUUGAGCG-GAG-GGCGAGu--GuUGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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