miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 87963 0.66 0.947
Target:  5'- aCCCCCG-AcgCcGGaCGCCG-CGCCGa -3'
miRNA:   3'- -GGGGGUaUuaGaCCaGCGGCgGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 83596 0.66 0.947
Target:  5'- aCUCCAUGAgcCUGGgCGCgCGCgaCGCCGa -3'
miRNA:   3'- gGGGGUAUUa-GACCaGCG-GCG--GUGGC- -5'
29742 5' -57.3 NC_006273.1 + 172948 0.66 0.947
Target:  5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3'
miRNA:   3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5'
29742 5' -57.3 NC_006273.1 + 166607 0.66 0.947
Target:  5'- gCCCCGcca-----UCGCCGCCGCCGc -3'
miRNA:   3'- gGGGGUauuagaccAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 180392 0.66 0.945752
Target:  5'- cCCCCCAccUAcgagcaggccauggGUCUgugcccgacgacGGUuuccacgccacCGCCGCCACCa -3'
miRNA:   3'- -GGGGGU--AU--------------UAGA------------CCA-----------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 74604 0.66 0.942765
Target:  5'- cUCUCCGUGAcugCaGGUCGCgcaGUCGCCGu -3'
miRNA:   3'- -GGGGGUAUUa--GaCCAGCGg--CGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 193147 0.66 0.942765
Target:  5'- -gCCCAUGGuucUCUGG-CaCCGgCCGCCGa -3'
miRNA:   3'- ggGGGUAUU---AGACCaGcGGC-GGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 200396 0.66 0.942765
Target:  5'- gCUCCGc-GUCgcuUCGCCGCCACCu -3'
miRNA:   3'- gGGGGUauUAGaccAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 196907 0.66 0.942765
Target:  5'- uCUCUCAUuc-CUGGUCuccggacccgcaGCCGCUACCu -3'
miRNA:   3'- -GGGGGUAuuaGACCAG------------CGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 145125 0.66 0.938315
Target:  5'- -gCCCGgg--CgauUCGCCGCCGCCGa -3'
miRNA:   3'- ggGGGUauuaGaccAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 227363 0.66 0.938315
Target:  5'- -gCgCAUGuuggGUCUGc-CGCCGCCACCGu -3'
miRNA:   3'- ggGgGUAU----UAGACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 157510 0.66 0.938315
Target:  5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3'
miRNA:   3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 213738 0.66 0.93365
Target:  5'- gCgCCGUGGUCUcGGUCGCCaGgCugUGg -3'
miRNA:   3'- gGgGGUAUUAGA-CCAGCGG-CgGugGC- -5'
29742 5' -57.3 NC_006273.1 + 160947 0.66 0.93365
Target:  5'- uUCUCCAUcagGAUCUGGU-GCagGCCACgCGg -3'
miRNA:   3'- -GGGGGUA---UUAGACCAgCGg-CGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 72943 0.66 0.93365
Target:  5'- --aCCAUAcgCUGaaagagCGCCGUCACCGc -3'
miRNA:   3'- gggGGUAUuaGACca----GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 78086 0.66 0.93365
Target:  5'- gUCCCCA--GUCaccacCGCCGCCGCUGu -3'
miRNA:   3'- -GGGGGUauUAGacca-GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 153326 0.66 0.93365
Target:  5'- uCCUCCGUcuccucuUCUGc-CGCCGCUGCCGc -3'
miRNA:   3'- -GGGGGUAuu-----AGACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 166226 0.66 0.93365
Target:  5'- aUCCCCGUuGUUggaggUGGUagaaGUCGCgGCCGg -3'
miRNA:   3'- -GGGGGUAuUAG-----ACCAg---CGGCGgUGGC- -5'
29742 5' -57.3 NC_006273.1 + 101146 0.66 0.93365
Target:  5'- gCCgCCGUGAUggugcGGuUCGCCGUCAUCGu -3'
miRNA:   3'- -GGgGGUAUUAga---CC-AGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 157714 0.67 0.923668
Target:  5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3'
miRNA:   3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.