Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 38301 | 0.7 | 0.78867 |
Target: 5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3' miRNA: 3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 112544 | 0.7 | 0.78867 |
Target: 5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3' miRNA: 3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 233194 | 0.7 | 0.78867 |
Target: 5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3' miRNA: 3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 163906 | 0.7 | 0.761993 |
Target: 5'- aUCCCAgcgAGgaggCUGcGaUCGCCGCCGCCu -3' miRNA: 3'- gGGGGUa--UUa---GAC-C-AGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 114797 | 0.7 | 0.797316 |
Target: 5'- -aCCCAaac----GUCGCCGCCACCGg -3' miRNA: 3'- ggGGGUauuagacCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 93489 | 0.7 | 0.771001 |
Target: 5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3' miRNA: 3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 196968 | 0.7 | 0.771001 |
Target: 5'- aCCUCGcucGUCgcuGUUGCCGCCACCGc -3' miRNA: 3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 107956 | 0.7 | 0.78867 |
Target: 5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3' miRNA: 3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 72306 | 0.7 | 0.78954 |
Target: 5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3' miRNA: 3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 230799 | 0.69 | 0.831269 |
Target: 5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3' miRNA: 3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 200670 | 0.69 | 0.830472 |
Target: 5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3' miRNA: 3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 38390 | 0.69 | 0.830472 |
Target: 5'- aCCgCCGccGUCc-GUCGCCGCCGCUGc -3' miRNA: 3'- -GGgGGUauUAGacCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 102803 | 0.69 | 0.822411 |
Target: 5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3' miRNA: 3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 199490 | 0.69 | 0.805826 |
Target: 5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3' miRNA: 3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 135530 | 0.69 | 0.805826 |
Target: 5'- uCCCUCuccaa-UGaUCGCCGCCGCCGc -3' miRNA: 3'- -GGGGGuauuagACcAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 205350 | 0.69 | 0.822411 |
Target: 5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3' miRNA: 3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 90288 | 0.69 | 0.814194 |
Target: 5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3' miRNA: 3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 148131 | 0.69 | 0.814194 |
Target: 5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3' miRNA: 3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 121846 | 0.69 | 0.822411 |
Target: 5'- uCCCCCGUAGcccuUCUcuUCGCCGCCcgcgcGCCc -3' miRNA: 3'- -GGGGGUAUU----AGAccAGCGGCGG-----UGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 112915 | 0.69 | 0.822411 |
Target: 5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3' miRNA: 3'- -GGGGGUauUAGACCagCGGCGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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