miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 197115 1.09 0.00387
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 49316 0.81 0.253499
Target:  5'- gCUCCAUGGUCUGGaUGCUGCCGCCc -3'
miRNA:   3'- gGGGGUAUUAGACCaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 180484 0.8 0.296719
Target:  5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3'
miRNA:   3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 161614 0.77 0.407838
Target:  5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3'
miRNA:   3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 21470 0.75 0.518993
Target:  5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3'
miRNA:   3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 152915 0.74 0.541581
Target:  5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3'
miRNA:   3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 179244 0.74 0.570255
Target:  5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3'
miRNA:   3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5'
29742 5' -57.3 NC_006273.1 + 96076 0.74 0.577968
Target:  5'- aCCCCCuggccgaggcgAGUCcgcGGUCGCCGCCuguuCCGu -3'
miRNA:   3'- -GGGGGua---------UUAGa--CCAGCGGCGGu---GGC- -5'
29742 5' -57.3 NC_006273.1 + 85819 0.73 0.599285
Target:  5'- uCCUCCAcGGcCcGGcCGCCGCCACCGu -3'
miRNA:   3'- -GGGGGUaUUaGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 52340 0.73 0.618758
Target:  5'- cCCCCCAcguccAUCUGcGUCuGUCGCCACuCGg -3'
miRNA:   3'- -GGGGGUau---UAGAC-CAG-CGGCGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 93192 0.73 0.638268
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 38313 0.72 0.65776
Target:  5'- aCCCUGUugaccGUCgccgugucGUCGCCGCCACCGu -3'
miRNA:   3'- gGGGGUAu----UAGac------CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 917 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 195809 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 136697 0.71 0.715547
Target:  5'- --aCCGg---CcGGUCGCCGCCGCCGc -3'
miRNA:   3'- gggGGUauuaGaCCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 73582 0.71 0.724998
Target:  5'- cCCUCCGauGUcCUGGccCGCCGCUGCCGc -3'
miRNA:   3'- -GGGGGUauUA-GACCa-GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 229124 0.71 0.734376
Target:  5'- -aCCCGgcg-CUGGUUGUuuCGCCGCCGg -3'
miRNA:   3'- ggGGGUauuaGACCAGCG--GCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 50737 0.71 0.743673
Target:  5'- --aCCA-GAUCUGGUCGCCGaCGCCc -3'
miRNA:   3'- gggGGUaUUAGACCAGCGGCgGUGGc -5'
29742 5' -57.3 NC_006273.1 + 43852 0.71 0.743673
Target:  5'- gCCaCCGUAGccCUGaUCGCCGCCgACCGa -3'
miRNA:   3'- gGG-GGUAUUa-GACcAGCGGCGG-UGGC- -5'
29742 5' -57.3 NC_006273.1 + 34043 0.71 0.752881
Target:  5'- gCCaCCGcgGAgggCgacaaagaggagUGGUCGCCGCCGCCGu -3'
miRNA:   3'- gGG-GGUa-UUa--G------------ACCAGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.