Results 41 - 60 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 87864 | 0.69 | 0.838368 |
Target: 5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3' miRNA: 3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 159116 | 0.68 | 0.853643 |
Target: 5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3' miRNA: 3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 75099 | 0.68 | 0.853643 |
Target: 5'- gCCCCGUccaccagCUccGUCGCCGCCGCUa -3' miRNA: 3'- gGGGGUAuua----GAc-CAGCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 106661 | 0.68 | 0.86101 |
Target: 5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3' miRNA: 3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 28064 | 0.68 | 0.86101 |
Target: 5'- aCCCCCAcccguGUCgc--CGCCGUCACCa -3' miRNA: 3'- -GGGGGUau---UAGaccaGCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 200442 | 0.68 | 0.868189 |
Target: 5'- aCCCCGUgGAUCa----GCCGCCACCu -3' miRNA: 3'- gGGGGUA-UUAGaccagCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 121639 | 0.68 | 0.868189 |
Target: 5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3' miRNA: 3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 154976 | 0.68 | 0.875176 |
Target: 5'- gCCCgaCGUGAguucgcUCUGcGcCGCUGCCGCCGc -3' miRNA: 3'- -GGGg-GUAUU------AGAC-CaGCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 205965 | 0.68 | 0.875176 |
Target: 5'- aUCCCCAUcGUC--GUCGCCuaUACCGg -3' miRNA: 3'- -GGGGGUAuUAGacCAGCGGcgGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 102563 | 0.68 | 0.888552 |
Target: 5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3' miRNA: 3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 60189 | 0.67 | 0.894935 |
Target: 5'- gCUCCAUc--CUGGUCGC-GCCgGCCGg -3' miRNA: 3'- gGGGGUAuuaGACCAGCGgCGG-UGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 96035 | 0.67 | 0.901108 |
Target: 5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3' miRNA: 3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 148495 | 0.67 | 0.901108 |
Target: 5'- uUUCCGUGGUuucgCUGGgcaGCCGCCGCUa -3' miRNA: 3'- gGGGGUAUUA----GACCag-CGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 183819 | 0.67 | 0.901108 |
Target: 5'- aCCCCuccGUCcuc-CGCCGCCACCa -3' miRNA: 3'- gGGGGuauUAGaccaGCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 205566 | 0.67 | 0.901108 |
Target: 5'- uCCUCCG-----UGGcUGCCGCCACCa -3' miRNA: 3'- -GGGGGUauuagACCaGCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 120937 | 0.67 | 0.901108 |
Target: 5'- gCUCgCCA-----UGG-CGCCGCCGCCGg -3' miRNA: 3'- -GGG-GGUauuagACCaGCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 95011 | 0.67 | 0.906483 |
Target: 5'- cCCCCCuc--UCgagGGUCcgGCCGCCagucgugACCGg -3' miRNA: 3'- -GGGGGuauuAGa--CCAG--CGGCGG-------UGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 72657 | 0.67 | 0.912819 |
Target: 5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3' miRNA: 3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 56652 | 0.67 | 0.912819 |
Target: 5'- --aCCGUGGUCgugaucaccGcCGCCGCCACCGc -3' miRNA: 3'- gggGGUAUUAGac-------CaGCGGCGGUGGC- -5' |
|||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 191470 | 0.67 | 0.918352 |
Target: 5'- gCCUgAUGguggaaGUC-GG-CGCCGCCGCCGc -3' miRNA: 3'- gGGGgUAU------UAGaCCaGCGGCGGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home