miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 157714 0.67 0.923668
Target:  5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3'
miRNA:   3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 151084 0.67 0.922622
Target:  5'- gCUCCGUGugcagccacagCUuGUCGCCGCgCACCGu -3'
miRNA:   3'- gGGGGUAUua---------GAcCAGCGGCG-GUGGC- -5'
29742 5' -57.3 NC_006273.1 + 191470 0.67 0.918352
Target:  5'- gCCUgAUGguggaaGUC-GG-CGCCGCCGCCGc -3'
miRNA:   3'- gGGGgUAU------UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 153063 0.67 0.918352
Target:  5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3'
miRNA:   3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72657 0.67 0.912819
Target:  5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 56652 0.67 0.912819
Target:  5'- --aCCGUGGUCgugaucaccGcCGCCGCCACCGc -3'
miRNA:   3'- gggGGUAUUAGac-------CaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 95011 0.67 0.906483
Target:  5'- cCCCCCuc--UCgagGGUCcgGCCGCCagucgugACCGg -3'
miRNA:   3'- -GGGGGuauuAGa--CCAG--CGGCGG-------UGGC- -5'
29742 5' -57.3 NC_006273.1 + 183819 0.67 0.901108
Target:  5'- aCCCCuccGUCcuc-CGCCGCCACCa -3'
miRNA:   3'- gGGGGuauUAGaccaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 96035 0.67 0.901108
Target:  5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3'
miRNA:   3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 205566 0.67 0.901108
Target:  5'- uCCUCCG-----UGGcUGCCGCCACCa -3'
miRNA:   3'- -GGGGGUauuagACCaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 120937 0.67 0.901108
Target:  5'- gCUCgCCA-----UGG-CGCCGCCGCCGg -3'
miRNA:   3'- -GGG-GGUauuagACCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 148495 0.67 0.901108
Target:  5'- uUUCCGUGGUuucgCUGGgcaGCCGCCGCUa -3'
miRNA:   3'- gGGGGUAUUA----GACCag-CGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 60189 0.67 0.894935
Target:  5'- gCUCCAUc--CUGGUCGC-GCCgGCCGg -3'
miRNA:   3'- gGGGGUAuuaGACCAGCGgCGG-UGGC- -5'
29742 5' -57.3 NC_006273.1 + 102563 0.68 0.888552
Target:  5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3'
miRNA:   3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 205965 0.68 0.875176
Target:  5'- aUCCCCAUcGUC--GUCGCCuaUACCGg -3'
miRNA:   3'- -GGGGGUAuUAGacCAGCGGcgGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 154976 0.68 0.875176
Target:  5'- gCCCgaCGUGAguucgcUCUGcGcCGCUGCCGCCGc -3'
miRNA:   3'- -GGGg-GUAUU------AGAC-CaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 200442 0.68 0.868189
Target:  5'- aCCCCGUgGAUCa----GCCGCCACCu -3'
miRNA:   3'- gGGGGUA-UUAGaccagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 121639 0.68 0.868189
Target:  5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3'
miRNA:   3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 28064 0.68 0.86101
Target:  5'- aCCCCCAcccguGUCgc--CGCCGUCACCa -3'
miRNA:   3'- -GGGGGUau---UAGaccaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 106661 0.68 0.86101
Target:  5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3'
miRNA:   3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.