miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 159116 0.68 0.853643
Target:  5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3'
miRNA:   3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 75099 0.68 0.853643
Target:  5'- gCCCCGUccaccagCUccGUCGCCGCCGCUa -3'
miRNA:   3'- gGGGGUAuua----GAc-CAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 87864 0.69 0.838368
Target:  5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3'
miRNA:   3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 230799 0.69 0.831269
Target:  5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3'
miRNA:   3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 38390 0.69 0.830472
Target:  5'- aCCgCCGccGUCc-GUCGCCGCCGCUGc -3'
miRNA:   3'- -GGgGGUauUAGacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 200670 0.69 0.830472
Target:  5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3'
miRNA:   3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5'
29742 5' -57.3 NC_006273.1 + 102803 0.69 0.822411
Target:  5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3'
miRNA:   3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 112915 0.69 0.822411
Target:  5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3'
miRNA:   3'- -GGGGGUauUAGACCagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 205350 0.69 0.822411
Target:  5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3'
miRNA:   3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5'
29742 5' -57.3 NC_006273.1 + 121846 0.69 0.822411
Target:  5'- uCCCCCGUAGcccuUCUcuUCGCCGCCcgcgcGCCc -3'
miRNA:   3'- -GGGGGUAUU----AGAccAGCGGCGG-----UGGc -5'
29742 5' -57.3 NC_006273.1 + 148131 0.69 0.814194
Target:  5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3'
miRNA:   3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5'
29742 5' -57.3 NC_006273.1 + 90288 0.69 0.814194
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 135530 0.69 0.805826
Target:  5'- uCCCUCuccaa-UGaUCGCCGCCGCCGc -3'
miRNA:   3'- -GGGGGuauuagACcAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 199490 0.69 0.805826
Target:  5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3'
miRNA:   3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 114797 0.7 0.797316
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72306 0.7 0.78954
Target:  5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3'
miRNA:   3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 38301 0.7 0.78867
Target:  5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3'
miRNA:   3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 233194 0.7 0.78867
Target:  5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3'
miRNA:   3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 112544 0.7 0.78867
Target:  5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3'
miRNA:   3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 107956 0.7 0.78867
Target:  5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3'
miRNA:   3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.