Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 917 | 0.71 | 0.715547 |
Target: 5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3' miRNA: 3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 21470 | 0.75 | 0.518993 |
Target: 5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3' miRNA: 3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 28064 | 0.68 | 0.86101 |
Target: 5'- aCCCCCAcccguGUCgc--CGCCGUCACCa -3' miRNA: 3'- -GGGGGUau---UAGaccaGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 34043 | 0.71 | 0.752881 |
Target: 5'- gCCaCCGcgGAgggCgacaaagaggagUGGUCGCCGCCGCCGu -3' miRNA: 3'- gGG-GGUa-UUa--G------------ACCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 38301 | 0.7 | 0.78867 |
Target: 5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3' miRNA: 3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 38313 | 0.72 | 0.65776 |
Target: 5'- aCCCUGUugaccGUCgccgugucGUCGCCGCCACCGu -3' miRNA: 3'- gGGGGUAu----UAGac------CAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 38390 | 0.69 | 0.830472 |
Target: 5'- aCCgCCGccGUCc-GUCGCCGCCGCUGc -3' miRNA: 3'- -GGgGGUauUAGacCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 43852 | 0.71 | 0.743673 |
Target: 5'- gCCaCCGUAGccCUGaUCGCCGCCgACCGa -3' miRNA: 3'- gGG-GGUAUUa-GACcAGCGGCGG-UGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 49316 | 0.81 | 0.253499 |
Target: 5'- gCUCCAUGGUCUGGaUGCUGCCGCCc -3' miRNA: 3'- gGGGGUAUUAGACCaGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 50737 | 0.71 | 0.743673 |
Target: 5'- --aCCA-GAUCUGGUCGCCGaCGCCc -3' miRNA: 3'- gggGGUaUUAGACCAGCGGCgGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 52340 | 0.73 | 0.618758 |
Target: 5'- cCCCCCAcguccAUCUGcGUCuGUCGCCACuCGg -3' miRNA: 3'- -GGGGGUau---UAGAC-CAG-CGGCGGUG-GC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 56652 | 0.67 | 0.912819 |
Target: 5'- --aCCGUGGUCgugaucaccGcCGCCGCCACCGc -3' miRNA: 3'- gggGGUAUUAGac-------CaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 60189 | 0.67 | 0.894935 |
Target: 5'- gCUCCAUc--CUGGUCGC-GCCgGCCGg -3' miRNA: 3'- gGGGGUAuuaGACCAGCGgCGG-UGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 72306 | 0.7 | 0.78954 |
Target: 5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3' miRNA: 3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 72657 | 0.67 | 0.912819 |
Target: 5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3' miRNA: 3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 72943 | 0.66 | 0.93365 |
Target: 5'- --aCCAUAcgCUGaaagagCGCCGUCACCGc -3' miRNA: 3'- gggGGUAUuaGACca----GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 73582 | 0.71 | 0.724998 |
Target: 5'- cCCUCCGauGUcCUGGccCGCCGCUGCCGc -3' miRNA: 3'- -GGGGGUauUA-GACCa-GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 74604 | 0.66 | 0.942765 |
Target: 5'- cUCUCCGUGAcugCaGGUCGCgcaGUCGCCGu -3' miRNA: 3'- -GGGGGUAUUa--GaCCAGCGg--CGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 75099 | 0.68 | 0.853643 |
Target: 5'- gCCCCGUccaccagCUccGUCGCCGCCGCUa -3' miRNA: 3'- gGGGGUAuua----GAc-CAGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 78086 | 0.66 | 0.93365 |
Target: 5'- gUCCCCA--GUCaccacCGCCGCCGCUGu -3' miRNA: 3'- -GGGGGUauUAGacca-GCGGCGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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