miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 83596 0.66 0.947
Target:  5'- aCUCCAUGAgcCUGGgCGCgCGCgaCGCCGa -3'
miRNA:   3'- gGGGGUAUUa-GACCaGCG-GCG--GUGGC- -5'
29742 5' -57.3 NC_006273.1 + 85819 0.73 0.599285
Target:  5'- uCCUCCAcGGcCcGGcCGCCGCCACCGu -3'
miRNA:   3'- -GGGGGUaUUaGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 87864 0.69 0.838368
Target:  5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3'
miRNA:   3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 87963 0.66 0.947
Target:  5'- aCCCCCG-AcgCcGGaCGCCG-CGCCGa -3'
miRNA:   3'- -GGGGGUaUuaGaCCaGCGGCgGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 90288 0.69 0.814194
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 93192 0.73 0.638268
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 93489 0.7 0.771001
Target:  5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3'
miRNA:   3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 94670 0.67 0.923668
Target:  5'- cCCCCCAcGGggggCUgGGUCGCgGaCC-CCGg -3'
miRNA:   3'- -GGGGGUaUUa---GA-CCAGCGgC-GGuGGC- -5'
29742 5' -57.3 NC_006273.1 + 95011 0.67 0.906483
Target:  5'- cCCCCCuc--UCgagGGUCcgGCCGCCagucgugACCGg -3'
miRNA:   3'- -GGGGGuauuAGa--CCAG--CGGCGG-------UGGC- -5'
29742 5' -57.3 NC_006273.1 + 96035 0.67 0.901108
Target:  5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3'
miRNA:   3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 96076 0.74 0.577968
Target:  5'- aCCCCCuggccgaggcgAGUCcgcGGUCGCCGCCuguuCCGu -3'
miRNA:   3'- -GGGGGua---------UUAGa--CCAGCGGCGGu---GGC- -5'
29742 5' -57.3 NC_006273.1 + 101146 0.66 0.93365
Target:  5'- gCCgCCGUGAUggugcGGuUCGCCGUCAUCGu -3'
miRNA:   3'- -GGgGGUAUUAga---CC-AGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 102563 0.68 0.888552
Target:  5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3'
miRNA:   3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 102803 0.69 0.822411
Target:  5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3'
miRNA:   3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 106661 0.68 0.86101
Target:  5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3'
miRNA:   3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 107956 0.7 0.78867
Target:  5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3'
miRNA:   3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5'
29742 5' -57.3 NC_006273.1 + 112544 0.7 0.78867
Target:  5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3'
miRNA:   3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 112915 0.69 0.822411
Target:  5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3'
miRNA:   3'- -GGGGGUauUAGACCagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 114797 0.7 0.797316
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 120937 0.67 0.901108
Target:  5'- gCUCgCCA-----UGG-CGCCGCCGCCGg -3'
miRNA:   3'- -GGG-GGUauuagACCaGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.