miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 121639 0.68 0.868189
Target:  5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3'
miRNA:   3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 121846 0.69 0.822411
Target:  5'- uCCCCCGUAGcccuUCUcuUCGCCGCCcgcgcGCCc -3'
miRNA:   3'- -GGGGGUAUU----AGAccAGCGGCGG-----UGGc -5'
29742 5' -57.3 NC_006273.1 + 135530 0.69 0.805826
Target:  5'- uCCCUCuccaa-UGaUCGCCGCCGCCGc -3'
miRNA:   3'- -GGGGGuauuagACcAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 136697 0.71 0.715547
Target:  5'- --aCCGg---CcGGUCGCCGCCGCCGc -3'
miRNA:   3'- gggGGUauuaGaCCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 145125 0.66 0.938315
Target:  5'- -gCCCGgg--CgauUCGCCGCCGCCGa -3'
miRNA:   3'- ggGGGUauuaGaccAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 148131 0.69 0.814194
Target:  5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3'
miRNA:   3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5'
29742 5' -57.3 NC_006273.1 + 148495 0.67 0.901108
Target:  5'- uUUCCGUGGUuucgCUGGgcaGCCGCCGCUa -3'
miRNA:   3'- gGGGGUAUUA----GACCag-CGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 151084 0.67 0.922622
Target:  5'- gCUCCGUGugcagccacagCUuGUCGCCGCgCACCGu -3'
miRNA:   3'- gGGGGUAUua---------GAcCAGCGGCG-GUGGC- -5'
29742 5' -57.3 NC_006273.1 + 152915 0.74 0.541581
Target:  5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3'
miRNA:   3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 153063 0.67 0.918352
Target:  5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3'
miRNA:   3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 153326 0.66 0.93365
Target:  5'- uCCUCCGUcuccucuUCUGc-CGCCGCUGCCGc -3'
miRNA:   3'- -GGGGGUAuu-----AGACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 154976 0.68 0.875176
Target:  5'- gCCCgaCGUGAguucgcUCUGcGcCGCUGCCGCCGc -3'
miRNA:   3'- -GGGg-GUAUU------AGAC-CaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 157510 0.66 0.938315
Target:  5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3'
miRNA:   3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 157714 0.67 0.923668
Target:  5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3'
miRNA:   3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 159116 0.68 0.853643
Target:  5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3'
miRNA:   3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 160947 0.66 0.93365
Target:  5'- uUCUCCAUcagGAUCUGGU-GCagGCCACgCGg -3'
miRNA:   3'- -GGGGGUA---UUAGACCAgCGg-CGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 161614 0.77 0.407838
Target:  5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3'
miRNA:   3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 163906 0.7 0.761993
Target:  5'- aUCCCAgcgAGgaggCUGcGaUCGCCGCCGCCu -3'
miRNA:   3'- gGGGGUa--UUa---GAC-C-AGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 166226 0.66 0.93365
Target:  5'- aUCCCCGUuGUUggaggUGGUagaaGUCGCgGCCGg -3'
miRNA:   3'- -GGGGGUAuUAG-----ACCAg---CGGCGgUGGC- -5'
29742 5' -57.3 NC_006273.1 + 166607 0.66 0.947
Target:  5'- gCCCCGcca-----UCGCCGCCGCCGc -3'
miRNA:   3'- gGGGGUauuagaccAGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.