miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 233194 0.7 0.78867
Target:  5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3'
miRNA:   3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 230799 0.69 0.831269
Target:  5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3'
miRNA:   3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 229124 0.71 0.734376
Target:  5'- -aCCCGgcg-CUGGUUGUuuCGCCGCCGg -3'
miRNA:   3'- ggGGGUauuaGACCAGCG--GCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 227363 0.66 0.938315
Target:  5'- -gCgCAUGuuggGUCUGc-CGCCGCCACCGu -3'
miRNA:   3'- ggGgGUAU----UAGACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 213738 0.66 0.93365
Target:  5'- gCgCCGUGGUCUcGGUCGCCaGgCugUGg -3'
miRNA:   3'- gGgGGUAUUAGA-CCAGCGG-CgGugGC- -5'
29742 5' -57.3 NC_006273.1 + 205965 0.68 0.875176
Target:  5'- aUCCCCAUcGUC--GUCGCCuaUACCGg -3'
miRNA:   3'- -GGGGGUAuUAGacCAGCGGcgGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 205566 0.67 0.901108
Target:  5'- uCCUCCG-----UGGcUGCCGCCACCa -3'
miRNA:   3'- -GGGGGUauuagACCaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 205350 0.69 0.822411
Target:  5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3'
miRNA:   3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5'
29742 5' -57.3 NC_006273.1 + 200670 0.69 0.830472
Target:  5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3'
miRNA:   3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5'
29742 5' -57.3 NC_006273.1 + 200442 0.68 0.868189
Target:  5'- aCCCCGUgGAUCa----GCCGCCACCu -3'
miRNA:   3'- gGGGGUA-UUAGaccagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 200396 0.66 0.942765
Target:  5'- gCUCCGc-GUCgcuUCGCCGCCACCu -3'
miRNA:   3'- gGGGGUauUAGaccAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 199490 0.69 0.805826
Target:  5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3'
miRNA:   3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 197115 1.09 0.00387
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 196968 0.7 0.771001
Target:  5'- aCCUCGcucGUCgcuGUUGCCGCCACCGc -3'
miRNA:   3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 196907 0.66 0.942765
Target:  5'- uCUCUCAUuc-CUGGUCuccggacccgcaGCCGCUACCu -3'
miRNA:   3'- -GGGGGUAuuaGACCAG------------CGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 195809 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 193147 0.66 0.942765
Target:  5'- -gCCCAUGGuucUCUGG-CaCCGgCCGCCGa -3'
miRNA:   3'- ggGGGUAUU---AGACCaGcGGC-GGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 191470 0.67 0.918352
Target:  5'- gCCUgAUGguggaaGUC-GG-CGCCGCCGCCGc -3'
miRNA:   3'- gGGGgUAU------UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 183819 0.67 0.901108
Target:  5'- aCCCCuccGUCcuc-CGCCGCCACCa -3'
miRNA:   3'- gGGGGuauUAGaccaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 180484 0.8 0.296719
Target:  5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3'
miRNA:   3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.