Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 180392 | 0.66 | 0.945752 |
Target: 5'- cCCCCCAccUAcgagcaggccauggGUCUgugcccgacgacGGUuuccacgccacCGCCGCCACCa -3' miRNA: 3'- -GGGGGU--AU--------------UAGA------------CCA-----------GCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 179244 | 0.74 | 0.570255 |
Target: 5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3' miRNA: 3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 172948 | 0.66 | 0.947 |
Target: 5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3' miRNA: 3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 166607 | 0.66 | 0.947 |
Target: 5'- gCCCCGcca-----UCGCCGCCGCCGc -3' miRNA: 3'- gGGGGUauuagaccAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 166226 | 0.66 | 0.93365 |
Target: 5'- aUCCCCGUuGUUggaggUGGUagaaGUCGCgGCCGg -3' miRNA: 3'- -GGGGGUAuUAG-----ACCAg---CGGCGgUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 163906 | 0.7 | 0.761993 |
Target: 5'- aUCCCAgcgAGgaggCUGcGaUCGCCGCCGCCu -3' miRNA: 3'- gGGGGUa--UUa---GAC-C-AGCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 161614 | 0.77 | 0.407838 |
Target: 5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3' miRNA: 3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 160947 | 0.66 | 0.93365 |
Target: 5'- uUCUCCAUcagGAUCUGGU-GCagGCCACgCGg -3' miRNA: 3'- -GGGGGUA---UUAGACCAgCGg-CGGUG-GC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 159116 | 0.68 | 0.853643 |
Target: 5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3' miRNA: 3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 157714 | 0.67 | 0.923668 |
Target: 5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3' miRNA: 3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 157510 | 0.66 | 0.938315 |
Target: 5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3' miRNA: 3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 154976 | 0.68 | 0.875176 |
Target: 5'- gCCCgaCGUGAguucgcUCUGcGcCGCUGCCGCCGc -3' miRNA: 3'- -GGGg-GUAUU------AGAC-CaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 153326 | 0.66 | 0.93365 |
Target: 5'- uCCUCCGUcuccucuUCUGc-CGCCGCUGCCGc -3' miRNA: 3'- -GGGGGUAuu-----AGACcaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 153063 | 0.67 | 0.918352 |
Target: 5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3' miRNA: 3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 152915 | 0.74 | 0.541581 |
Target: 5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3' miRNA: 3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 151084 | 0.67 | 0.922622 |
Target: 5'- gCUCCGUGugcagccacagCUuGUCGCCGCgCACCGu -3' miRNA: 3'- gGGGGUAUua---------GAcCAGCGGCG-GUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 148495 | 0.67 | 0.901108 |
Target: 5'- uUUCCGUGGUuucgCUGGgcaGCCGCCGCUa -3' miRNA: 3'- gGGGGUAUUA----GACCag-CGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 148131 | 0.69 | 0.814194 |
Target: 5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3' miRNA: 3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 145125 | 0.66 | 0.938315 |
Target: 5'- -gCCCGgg--CgauUCGCCGCCGCCGa -3' miRNA: 3'- ggGGGUauuaGaccAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 136697 | 0.71 | 0.715547 |
Target: 5'- --aCCGg---CcGGUCGCCGCCGCCGc -3' miRNA: 3'- gggGGUauuaGaCCAGCGGCGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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