Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29742 | 5' | -57.3 | NC_006273.1 | + | 135530 | 0.69 | 0.805826 |
Target: 5'- uCCCUCuccaa-UGaUCGCCGCCGCCGc -3' miRNA: 3'- -GGGGGuauuagACcAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 121846 | 0.69 | 0.822411 |
Target: 5'- uCCCCCGUAGcccuUCUcuUCGCCGCCcgcgcGCCc -3' miRNA: 3'- -GGGGGUAUU----AGAccAGCGGCGG-----UGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 121639 | 0.68 | 0.868189 |
Target: 5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3' miRNA: 3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 120937 | 0.67 | 0.901108 |
Target: 5'- gCUCgCCA-----UGG-CGCCGCCGCCGg -3' miRNA: 3'- -GGG-GGUauuagACCaGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 114797 | 0.7 | 0.797316 |
Target: 5'- -aCCCAaac----GUCGCCGCCACCGg -3' miRNA: 3'- ggGGGUauuagacCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 112915 | 0.69 | 0.822411 |
Target: 5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3' miRNA: 3'- -GGGGGUauUAGACCagCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 112544 | 0.7 | 0.78867 |
Target: 5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3' miRNA: 3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 107956 | 0.7 | 0.78867 |
Target: 5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3' miRNA: 3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 106661 | 0.68 | 0.86101 |
Target: 5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3' miRNA: 3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 102803 | 0.69 | 0.822411 |
Target: 5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3' miRNA: 3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 102563 | 0.68 | 0.888552 |
Target: 5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3' miRNA: 3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 101146 | 0.66 | 0.93365 |
Target: 5'- gCCgCCGUGAUggugcGGuUCGCCGUCAUCGu -3' miRNA: 3'- -GGgGGUAUUAga---CC-AGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 96076 | 0.74 | 0.577968 |
Target: 5'- aCCCCCuggccgaggcgAGUCcgcGGUCGCCGCCuguuCCGu -3' miRNA: 3'- -GGGGGua---------UUAGa--CCAGCGGCGGu---GGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 96035 | 0.67 | 0.901108 |
Target: 5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3' miRNA: 3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 95011 | 0.67 | 0.906483 |
Target: 5'- cCCCCCuc--UCgagGGUCcgGCCGCCagucgugACCGg -3' miRNA: 3'- -GGGGGuauuAGa--CCAG--CGGCGG-------UGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 94670 | 0.67 | 0.923668 |
Target: 5'- cCCCCCAcGGggggCUgGGUCGCgGaCC-CCGg -3' miRNA: 3'- -GGGGGUaUUa---GA-CCAGCGgC-GGuGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 93489 | 0.7 | 0.771001 |
Target: 5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3' miRNA: 3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 93192 | 0.73 | 0.638268 |
Target: 5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3' miRNA: 3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 90288 | 0.69 | 0.814194 |
Target: 5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3' miRNA: 3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5' |
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29742 | 5' | -57.3 | NC_006273.1 | + | 87963 | 0.66 | 0.947 |
Target: 5'- aCCCCCG-AcgCcGGaCGCCG-CGCCGa -3' miRNA: 3'- -GGGGGUaUuaGaCCaGCGGCgGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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