miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 148495 0.67 0.901108
Target:  5'- uUUCCGUGGUuucgCUGGgcaGCCGCCGCUa -3'
miRNA:   3'- gGGGGUAUUA----GACCag-CGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 112544 0.7 0.78867
Target:  5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3'
miRNA:   3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 112915 0.69 0.822411
Target:  5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3'
miRNA:   3'- -GGGGGUauUAGACCagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 102803 0.69 0.822411
Target:  5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3'
miRNA:   3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 38390 0.69 0.830472
Target:  5'- aCCgCCGccGUCc-GUCGCCGCCGCUGc -3'
miRNA:   3'- -GGgGGUauUAGacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 75099 0.68 0.853643
Target:  5'- gCCCCGUccaccagCUccGUCGCCGCCGCUa -3'
miRNA:   3'- gGGGGUAuua----GAc-CAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 154976 0.68 0.875176
Target:  5'- gCCCgaCGUGAguucgcUCUGcGcCGCUGCCGCCGc -3'
miRNA:   3'- -GGGg-GUAUU------AGAC-CaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 60189 0.67 0.894935
Target:  5'- gCUCCAUc--CUGGUCGC-GCCgGCCGg -3'
miRNA:   3'- gGGGGUAuuaGACCAGCGgCGG-UGGC- -5'
29742 5' -57.3 NC_006273.1 + 120937 0.67 0.901108
Target:  5'- gCUCgCCA-----UGG-CGCCGCCGCCGg -3'
miRNA:   3'- -GGG-GGUauuagACCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 233194 0.7 0.78867
Target:  5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3'
miRNA:   3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 163906 0.7 0.761993
Target:  5'- aUCCCAgcgAGgaggCUGcGaUCGCCGCCGCCu -3'
miRNA:   3'- gGGGGUa--UUa---GAC-C-AGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 34043 0.71 0.752881
Target:  5'- gCCaCCGcgGAgggCgacaaagaggagUGGUCGCCGCCGCCGu -3'
miRNA:   3'- gGG-GGUa-UUa--G------------ACCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 96076 0.74 0.577968
Target:  5'- aCCCCCuggccgaggcgAGUCcgcGGUCGCCGCCuguuCCGu -3'
miRNA:   3'- -GGGGGua---------UUAGa--CCAGCGGCGGu---GGC- -5'
29742 5' -57.3 NC_006273.1 + 85819 0.73 0.599285
Target:  5'- uCCUCCAcGGcCcGGcCGCCGCCACCGu -3'
miRNA:   3'- -GGGGGUaUUaGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 52340 0.73 0.618758
Target:  5'- cCCCCCAcguccAUCUGcGUCuGUCGCCACuCGg -3'
miRNA:   3'- -GGGGGUau---UAGAC-CAG-CGGCGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 38313 0.72 0.65776
Target:  5'- aCCCUGUugaccGUCgccgugucGUCGCCGCCACCGu -3'
miRNA:   3'- gGGGGUAu----UAGac------CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 195809 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 73582 0.71 0.724998
Target:  5'- cCCUCCGauGUcCUGGccCGCCGCUGCCGc -3'
miRNA:   3'- -GGGGGUauUA-GACCa-GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 229124 0.71 0.734376
Target:  5'- -aCCCGgcg-CUGGUUGUuuCGCCGCCGg -3'
miRNA:   3'- ggGGGUauuaGACCAGCG--GCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 43852 0.71 0.743673
Target:  5'- gCCaCCGUAGccCUGaUCGCCGCCgACCGa -3'
miRNA:   3'- gGG-GGUAUUa-GACcAGCGGCGG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.