miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 197115 1.09 0.00387
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 135530 0.69 0.805826
Target:  5'- uCCCUCuccaa-UGaUCGCCGCCGCCGc -3'
miRNA:   3'- -GGGGGuauuagACcAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 148131 0.69 0.814194
Target:  5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3'
miRNA:   3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5'
29742 5' -57.3 NC_006273.1 + 172948 0.66 0.947
Target:  5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3'
miRNA:   3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5'
29742 5' -57.3 NC_006273.1 + 152915 0.74 0.541581
Target:  5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3'
miRNA:   3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 179244 0.74 0.570255
Target:  5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3'
miRNA:   3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5'
29742 5' -57.3 NC_006273.1 + 136697 0.71 0.715547
Target:  5'- --aCCGg---CcGGUCGCCGCCGCCGc -3'
miRNA:   3'- gggGGUauuaGaCCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 917 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 196968 0.7 0.771001
Target:  5'- aCCUCGcucGUCgcuGUUGCCGCCACCGc -3'
miRNA:   3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 199490 0.69 0.805826
Target:  5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3'
miRNA:   3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5'
29742 5' -57.3 NC_006273.1 + 107956 0.7 0.78867
Target:  5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3'
miRNA:   3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5'
29742 5' -57.3 NC_006273.1 + 93489 0.7 0.771001
Target:  5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3'
miRNA:   3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 180484 0.8 0.296719
Target:  5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3'
miRNA:   3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72306 0.7 0.78954
Target:  5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3'
miRNA:   3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 161614 0.77 0.407838
Target:  5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3'
miRNA:   3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 50737 0.71 0.743673
Target:  5'- --aCCA-GAUCUGGUCGCCGaCGCCc -3'
miRNA:   3'- gggGGUaUUAGACCAGCGGCgGUGGc -5'
29742 5' -57.3 NC_006273.1 + 114797 0.7 0.797316
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 90288 0.69 0.814194
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 21470 0.75 0.518993
Target:  5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3'
miRNA:   3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 93192 0.73 0.638268
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.