miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 200670 0.69 0.830472
Target:  5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3'
miRNA:   3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5'
29742 5' -57.3 NC_006273.1 + 205350 0.69 0.822411
Target:  5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3'
miRNA:   3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72306 0.7 0.78954
Target:  5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3'
miRNA:   3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 136697 0.71 0.715547
Target:  5'- --aCCGg---CcGGUCGCCGCCGCCGc -3'
miRNA:   3'- gggGGUauuaGaCCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72657 0.67 0.912819
Target:  5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 28064 0.68 0.86101
Target:  5'- aCCCCCAcccguGUCgc--CGCCGUCACCa -3'
miRNA:   3'- -GGGGGUau---UAGaccaGCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 148131 0.69 0.814194
Target:  5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3'
miRNA:   3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5'
29742 5' -57.3 NC_006273.1 + 93192 0.73 0.638268
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 106661 0.68 0.86101
Target:  5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3'
miRNA:   3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 179244 0.74 0.570255
Target:  5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3'
miRNA:   3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5'
29742 5' -57.3 NC_006273.1 + 121846 0.69 0.822411
Target:  5'- uCCCCCGUAGcccuUCUcuUCGCCGCCcgcgcGCCc -3'
miRNA:   3'- -GGGGGUAUU----AGAccAGCGGCGG-----UGGc -5'
29742 5' -57.3 NC_006273.1 + 230799 0.69 0.831269
Target:  5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3'
miRNA:   3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 90288 0.69 0.814194
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 114797 0.7 0.797316
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 196968 0.7 0.771001
Target:  5'- aCCUCGcucGUCgcuGUUGCCGCCACCGc -3'
miRNA:   3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 917 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 213738 0.66 0.93365
Target:  5'- gCgCCGUGGUCUcGGUCGCCaGgCugUGg -3'
miRNA:   3'- gGgGGUAUUAGA-CCAGCGG-CgGugGC- -5'
29742 5' -57.3 NC_006273.1 + 153063 0.67 0.918352
Target:  5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3'
miRNA:   3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 102563 0.68 0.888552
Target:  5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3'
miRNA:   3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 121639 0.68 0.868189
Target:  5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3'
miRNA:   3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.