miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29742 5' -57.3 NC_006273.1 + 159116 0.68 0.853643
Target:  5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3'
miRNA:   3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 106661 0.68 0.86101
Target:  5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3'
miRNA:   3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 157510 0.66 0.938315
Target:  5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3'
miRNA:   3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 197115 1.09 0.00387
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 172948 0.66 0.947
Target:  5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3'
miRNA:   3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5'
29742 5' -57.3 NC_006273.1 + 180392 0.66 0.945752
Target:  5'- cCCCCCAccUAcgagcaggccauggGUCUgugcccgacgacGGUuuccacgccacCGCCGCCACCa -3'
miRNA:   3'- -GGGGGU--AU--------------UAGA------------CCA-----------GCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 195809 0.71 0.715547
Target:  5'- cCCCCCGccc-CUcGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGA-CCAGCGgCGGUGgC- -5'
29742 5' -57.3 NC_006273.1 + 166226 0.66 0.93365
Target:  5'- aUCCCCGUuGUUggaggUGGUagaaGUCGCgGCCGg -3'
miRNA:   3'- -GGGGGUAuUAG-----ACCAg---CGGCGgUGGC- -5'
29742 5' -57.3 NC_006273.1 + 85819 0.73 0.599285
Target:  5'- uCCUCCAcGGcCcGGcCGCCGCCACCGu -3'
miRNA:   3'- -GGGGGUaUUaGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 73582 0.71 0.724998
Target:  5'- cCCUCCGauGUcCUGGccCGCCGCUGCCGc -3'
miRNA:   3'- -GGGGGUauUA-GACCa-GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 233194 0.7 0.78867
Target:  5'- aCCCaCCAUcaccGUC-GG-CGCCGCCGCUGc -3'
miRNA:   3'- -GGG-GGUAu---UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 78086 0.66 0.93365
Target:  5'- gUCCCCA--GUCaccacCGCCGCCGCUGu -3'
miRNA:   3'- -GGGGGUauUAGacca-GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 72943 0.66 0.93365
Target:  5'- --aCCAUAcgCUGaaagagCGCCGUCACCGc -3'
miRNA:   3'- gggGGUAUuaGACca----GCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 94670 0.67 0.923668
Target:  5'- cCCCCCAcGGggggCUgGGUCGCgGaCC-CCGg -3'
miRNA:   3'- -GGGGGUaUUa---GA-CCAGCGgC-GGuGGC- -5'
29742 5' -57.3 NC_006273.1 + 151084 0.67 0.922622
Target:  5'- gCUCCGUGugcagccacagCUuGUCGCCGCgCACCGu -3'
miRNA:   3'- gGGGGUAUua---------GAcCAGCGGCG-GUGGC- -5'
29742 5' -57.3 NC_006273.1 + 191470 0.67 0.918352
Target:  5'- gCCUgAUGguggaaGUC-GG-CGCCGCCGCCGc -3'
miRNA:   3'- gGGGgUAU------UAGaCCaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 56652 0.67 0.912819
Target:  5'- --aCCGUGGUCgugaucaccGcCGCCGCCACCGc -3'
miRNA:   3'- gggGGUAUUAGac-------CaGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 102803 0.69 0.822411
Target:  5'- gUCCCgGUAAUCgagauaGUCGUCGUCAUCGa -3'
miRNA:   3'- -GGGGgUAUUAGac----CAGCGGCGGUGGC- -5'
29742 5' -57.3 NC_006273.1 + 112915 0.69 0.822411
Target:  5'- cUCUCCG--AUUUGGaaGCCGCCGCCu -3'
miRNA:   3'- -GGGGGUauUAGACCagCGGCGGUGGc -5'
29742 5' -57.3 NC_006273.1 + 112544 0.7 0.78867
Target:  5'- gCCCCGUcugAcgC-GGUCGCCgcgucagcgGCCGCCGg -3'
miRNA:   3'- gGGGGUA---UuaGaCCAGCGG---------CGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.