miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29745 3' -55.7 NC_006273.1 + 201187 0.66 0.967136
Target:  5'- aAGUaccGGACGCACcGCGCCGcCGUUu -3'
miRNA:   3'- -UCGgacCCUGUGUGuUGUGGCaGCAG- -5'
29745 3' -55.7 NC_006273.1 + 102946 0.66 0.963988
Target:  5'- cGCgUGcucGCGCACcgUACCGUCGUCc -3'
miRNA:   3'- uCGgACcc-UGUGUGuuGUGGCAGCAG- -5'
29745 3' -55.7 NC_006273.1 + 152854 0.66 0.963988
Target:  5'- cGGCCUGGGcgcCGCGgGAaagGCCGUUGg- -3'
miRNA:   3'- -UCGGACCCu--GUGUgUUg--UGGCAGCag -5'
29745 3' -55.7 NC_006273.1 + 233691 0.66 0.963988
Target:  5'- cGCCUccucGGCGCGCAGCAaCGUCuGUCg -3'
miRNA:   3'- uCGGAcc--CUGUGUGUUGUgGCAG-CAG- -5'
29745 3' -55.7 NC_006273.1 + 230823 0.66 0.963988
Target:  5'- uGCCaUGGGcCACuguCAACGCCGaaaagcgcUUGUCu -3'
miRNA:   3'- uCGG-ACCCuGUGu--GUUGUGGC--------AGCAG- -5'
29745 3' -55.7 NC_006273.1 + 221041 0.66 0.963988
Target:  5'- gAGCUccGGcGGCACaacuGCAGCGCCGUCa-- -3'
miRNA:   3'- -UCGGa-CC-CUGUG----UGUUGUGGCAGcag -5'
29745 3' -55.7 NC_006273.1 + 38799 0.66 0.963988
Target:  5'- cGCCUccucGGCGCGCAGCAaCGUCuGUCg -3'
miRNA:   3'- uCGGAcc--CUGUGUGUUGUgGCAG-CAG- -5'
29745 3' -55.7 NC_006273.1 + 43433 0.66 0.963988
Target:  5'- aGGUCguggUGGuGACACACuugGGCGCCGUCa-- -3'
miRNA:   3'- -UCGG----ACC-CUGUGUG---UUGUGGCAGcag -5'
29745 3' -55.7 NC_006273.1 + 93660 0.66 0.963004
Target:  5'- cGCCcugcUGGGACgACGCAAUggcggcggaucccaGCCcugaGUCGUCg -3'
miRNA:   3'- uCGG----ACCCUG-UGUGUUG--------------UGG----CAGCAG- -5'
29745 3' -55.7 NC_006273.1 + 39593 0.66 0.960636
Target:  5'- gGGCggGGGGCGCgGCGACauGCCGUUG-Cg -3'
miRNA:   3'- -UCGgaCCCUGUG-UGUUG--UGGCAGCaG- -5'
29745 3' -55.7 NC_006273.1 + 216040 0.66 0.960636
Target:  5'- gAGCCUGGGAguccaucgcuuCAgGCc-CACCGcUCGUUc -3'
miRNA:   3'- -UCGGACCCU-----------GUgUGuuGUGGC-AGCAG- -5'
29745 3' -55.7 NC_006273.1 + 234486 0.66 0.960636
Target:  5'- gGGCggGGGGCGCgGCGACauGCCGUUG-Cg -3'
miRNA:   3'- -UCGgaCCCUGUG-UGUUG--UGGCAGCaG- -5'
29745 3' -55.7 NC_006273.1 + 111798 0.66 0.960636
Target:  5'- -cUCUGGGuCACGCGGCAUCGU-GUa -3'
miRNA:   3'- ucGGACCCuGUGUGUUGUGGCAgCAg -5'
29745 3' -55.7 NC_006273.1 + 48861 0.66 0.960636
Target:  5'- uAGCCaGGGGCGagu----CCGUCGUCa -3'
miRNA:   3'- -UCGGaCCCUGUguguuguGGCAGCAG- -5'
29745 3' -55.7 NC_006273.1 + 69661 0.66 0.957074
Target:  5'- cGCCUGGcaccagcgcaucGACACGCAGCaggagcugacgGCCGcCGaUCg -3'
miRNA:   3'- uCGGACC------------CUGUGUGUUG-----------UGGCaGC-AG- -5'
29745 3' -55.7 NC_006273.1 + 103106 0.66 0.957074
Target:  5'- gGGgCUGGuGCugGCcACGUCGUCGUCg -3'
miRNA:   3'- -UCgGACCcUGugUGuUGUGGCAGCAG- -5'
29745 3' -55.7 NC_006273.1 + 147373 0.66 0.957074
Target:  5'- cGCCggggGGGAggUGCACGAC-CUGUCGg- -3'
miRNA:   3'- uCGGa---CCCU--GUGUGUUGuGGCAGCag -5'
29745 3' -55.7 NC_006273.1 + 156360 0.66 0.957074
Target:  5'- cAGCCUGGcGCACuACGugACgGcUUGUCu -3'
miRNA:   3'- -UCGGACCcUGUG-UGUugUGgC-AGCAG- -5'
29745 3' -55.7 NC_006273.1 + 117912 0.66 0.957074
Target:  5'- cGCCguaaGGAaacCGCGGCGgCGUCGUCg -3'
miRNA:   3'- uCGGac--CCUgu-GUGUUGUgGCAGCAG- -5'
29745 3' -55.7 NC_006273.1 + 104518 0.66 0.954834
Target:  5'- cGGCC-GGGuCGCGCGGCAgugacagcuugugacCCGcgcUCGUCg -3'
miRNA:   3'- -UCGGaCCCuGUGUGUUGU---------------GGC---AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.