miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29745 5' -52 NC_006273.1 + 170583 0.66 0.996788
Target:  5'- -aGGCGGCGcggCAcUUCGUCgCCCAGUc -3'
miRNA:   3'- ugUUGCUGCa--GUaAAGCGGaGGGUCA- -5'
29745 5' -52 NC_006273.1 + 214441 0.66 0.996241
Target:  5'- cCAGCGACGUCGgucacgGCCaCCUAGa -3'
miRNA:   3'- uGUUGCUGCAGUaaag--CGGaGGGUCa -5'
29745 5' -52 NC_006273.1 + 74272 0.66 0.996241
Target:  5'- gGC-ACGugGUCugugCgGCuCUCCCAGUa -3'
miRNA:   3'- -UGuUGCugCAGuaaaG-CG-GAGGGUCA- -5'
29745 5' -52 NC_006273.1 + 88332 0.66 0.995619
Target:  5'- -uGACcAUGUCAUUUCGgCUgCCCAGc -3'
miRNA:   3'- ugUUGcUGCAGUAAAGCgGA-GGGUCa -5'
29745 5' -52 NC_006273.1 + 35951 0.66 0.995619
Target:  5'- cCGACGACGUgGagUUCG-UUCCCGGg -3'
miRNA:   3'- uGUUGCUGCAgUa-AAGCgGAGGGUCa -5'
29745 5' -52 NC_006273.1 + 222843 0.66 0.995619
Target:  5'- aGCAACGgacGCGUCAUcUCGCCUggagugCgCAGa -3'
miRNA:   3'- -UGUUGC---UGCAGUAaAGCGGA------GgGUCa -5'
29745 5' -52 NC_006273.1 + 67499 0.66 0.995619
Target:  5'- gGCGGCGAUgGUCAUgu--UCUCCCAGg -3'
miRNA:   3'- -UGUUGCUG-CAGUAaagcGGAGGGUCa -5'
29745 5' -52 NC_006273.1 + 79114 0.66 0.994916
Target:  5'- aGCGACGGCGUCGc-UC-CCaCCCGGg -3'
miRNA:   3'- -UGUUGCUGCAGUaaAGcGGaGGGUCa -5'
29745 5' -52 NC_006273.1 + 163373 0.66 0.994916
Target:  5'- gGCAGCG-CGUCuacgagcUCGUCUCCgAGa -3'
miRNA:   3'- -UGUUGCuGCAGuaa----AGCGGAGGgUCa -5'
29745 5' -52 NC_006273.1 + 177835 0.67 0.993235
Target:  5'- gGCAGCGcGCGagAgcaCGCgUCCCAGUa -3'
miRNA:   3'- -UGUUGC-UGCagUaaaGCGgAGGGUCA- -5'
29745 5' -52 NC_006273.1 + 132529 0.67 0.993235
Target:  5'- gACGACGugGUU--UUUGCUUCCgAGc -3'
miRNA:   3'- -UGUUGCugCAGuaAAGCGGAGGgUCa -5'
29745 5' -52 NC_006273.1 + 30798 0.67 0.993235
Target:  5'- aGCAGCGGCGguagCAgcagUCGCaccaCCAGUa -3'
miRNA:   3'- -UGUUGCUGCa---GUaa--AGCGgag-GGUCA- -5'
29745 5' -52 NC_006273.1 + 72957 0.67 0.993235
Target:  5'- -gAGCGcCGUCAc--CGCCUCCCGc- -3'
miRNA:   3'- ugUUGCuGCAGUaaaGCGGAGGGUca -5'
29745 5' -52 NC_006273.1 + 177199 0.67 0.992243
Target:  5'- gACggUGugGUCAUUgUGCCcgCCCAa- -3'
miRNA:   3'- -UGuuGCugCAGUAAaGCGGa-GGGUca -5'
29745 5' -52 NC_006273.1 + 40211 0.67 0.992243
Target:  5'- cCGACGGCGUUuuggCGCCcCCCAu- -3'
miRNA:   3'- uGUUGCUGCAGuaaaGCGGaGGGUca -5'
29745 5' -52 NC_006273.1 + 88139 0.67 0.992243
Target:  5'- uCAGCGACG-CGgccagCGCCUCgCAGc -3'
miRNA:   3'- uGUUGCUGCaGUaaa--GCGGAGgGUCa -5'
29745 5' -52 NC_006273.1 + 208869 0.67 0.991814
Target:  5'- gGCAACGGgGgugguaguacccaCAUUUUGCuCUCCCGGa -3'
miRNA:   3'- -UGUUGCUgCa------------GUAAAGCG-GAGGGUCa -5'
29745 5' -52 NC_006273.1 + 68744 0.67 0.991137
Target:  5'- uACAACGAauUCAccagcUUUCGCCUgCCCAc- -3'
miRNA:   3'- -UGUUGCUgcAGU-----AAAGCGGA-GGGUca -5'
29745 5' -52 NC_006273.1 + 120659 0.67 0.991137
Target:  5'- cAguACGGCGaUCAUgggCGCC-CCCAGc -3'
miRNA:   3'- -UguUGCUGC-AGUAaa-GCGGaGGGUCa -5'
29745 5' -52 NC_006273.1 + 106649 0.67 0.991137
Target:  5'- gGCGACGACGcuUCA--UCcUCUCCCGGa -3'
miRNA:   3'- -UGUUGCUGC--AGUaaAGcGGAGGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.