Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2975 | 5' | -57.1 | NC_001493.1 | + | 107983 | 0.66 | 0.858206 |
Target: 5'- -aUCGCGGagaaacgagggggaCCcCCCgUGUCCGCG-GUCa -3' miRNA: 3'- gaAGUGCC--------------GGaGGG-ACAGGUGCuCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 124867 | 0.66 | 0.818958 |
Target: 5'- -aUCACGGCCUCCCcccucgCCgccauccccgggaGCGcGGUCg -3' miRNA: 3'- gaAGUGCCGGAGGGaca---GG-------------UGC-UCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 48535 | 0.66 | 0.819818 |
Target: 5'- --cCAUGGUCUCCCgguagagguuucUGUCCGcCGGcGUCg -3' miRNA: 3'- gaaGUGCCGGAGGG------------ACAGGU-GCU-CAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 43343 | 0.66 | 0.819818 |
Target: 5'- --aUACGGUCUCCCaugugaugGUCCACaGGUg -3' miRNA: 3'- gaaGUGCCGGAGGGa-------CAGGUGcUCAg -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 35871 | 0.66 | 0.852758 |
Target: 5'- -gUCACGGCCUUuuUcUCgGCGAuGUCc -3' miRNA: 3'- gaAGUGCCGGAGggAcAGgUGCU-CAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 9313 | 0.66 | 0.818958 |
Target: 5'- -aUCACGGCCUCCCcccucgCCgccauccccgggaGCGcGGUCg -3' miRNA: 3'- gaAGUGCCGGAGGGaca---GG-------------UGC-UCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 42257 | 0.67 | 0.774872 |
Target: 5'- --gCGCGGCgaCCCUGUCCGCc---- -3' miRNA: 3'- gaaGUGCCGgaGGGACAGGUGcucag -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 102543 | 0.67 | 0.811137 |
Target: 5'- cCUUCGacCGGCgCgggCCCUGUCCAcuucuCGAGg- -3' miRNA: 3'- -GAAGU--GCCG-Ga--GGGACAGGU-----GCUCag -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 123145 | 0.68 | 0.716827 |
Target: 5'- --cCGCGGCuCUCCCUGU--GCG-GUCa -3' miRNA: 3'- gaaGUGCCG-GAGGGACAggUGCuCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 7591 | 0.68 | 0.716827 |
Target: 5'- --cCGCGGCuCUCCCUGU--GCG-GUCa -3' miRNA: 3'- gaaGUGCCG-GAGGGACAggUGCuCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 106655 | 0.69 | 0.705844 |
Target: 5'- gUUC-UGGCUcuugauaUCCCUGUgCAUGAGUCc -3' miRNA: 3'- gAAGuGCCGG-------AGGGACAgGUGCUCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 104008 | 0.7 | 0.645939 |
Target: 5'- uCUUCACuGGCauCUCCCcgaUGUCCACcGGGUa -3' miRNA: 3'- -GAAGUG-CCG--GAGGG---ACAGGUG-CUCAg -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 107519 | 0.71 | 0.551316 |
Target: 5'- -gUCGCGcGUCUCCCUGUggugucguacgacaCgACGGGUCg -3' miRNA: 3'- gaAGUGC-CGGAGGGACA--------------GgUGCUCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 70795 | 0.71 | 0.564376 |
Target: 5'- gUUCACGGCgcuaUCCCUGUCCA---GUCc -3' miRNA: 3'- gAAGUGCCGg---AGGGACAGGUgcuCAG- -5' |
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2975 | 5' | -57.1 | NC_001493.1 | + | 95981 | 1.1 | 0.001766 |
Target: 5'- uCUUCACGGCCUCCCUGUCCACGAGUCg -3' miRNA: 3'- -GAAGUGCCGGAGGGACAGGUGCUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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