miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29753 5' -55.1 NC_006273.1 + 113610 0.66 0.96804
Target:  5'- cAUCgggcCGUGGuACGcGCgcgacCCCGCGGUCa -3'
miRNA:   3'- -UAGau--GCACC-UGU-CGaa---GGGCGUCAG- -5'
29753 5' -55.1 NC_006273.1 + 149691 0.66 0.957983
Target:  5'- -aCUugGUGGAgcGCgUUCCCGCAuccacaacGUCa -3'
miRNA:   3'- uaGAugCACCUguCG-AAGGGCGU--------CAG- -5'
29753 5' -55.1 NC_006273.1 + 215031 0.66 0.950187
Target:  5'- gGUCcgcCGguguugGGACcGCUUCCCGCGGg- -3'
miRNA:   3'- -UAGau-GCa-----CCUGuCGAAGGGCGUCag -5'
29753 5' -55.1 NC_006273.1 + 188690 0.67 0.936782
Target:  5'- -gCUGCGUGcGCAGg-UCCCGCAauacGUCg -3'
miRNA:   3'- uaGAUGCACcUGUCgaAGGGCGU----CAG- -5'
29753 5' -55.1 NC_006273.1 + 105445 0.67 0.936782
Target:  5'- ---aACGUgguaGGACAGCgcgcgCCCGgCGGUCa -3'
miRNA:   3'- uagaUGCA----CCUGUCGaa---GGGC-GUCAG- -5'
29753 5' -55.1 NC_006273.1 + 206131 0.69 0.869746
Target:  5'- uGUCgGCGUgggcacGGACAGgUUCCCGCgcagGGUCc -3'
miRNA:   3'- -UAGaUGCA------CCUGUCgAAGGGCG----UCAG- -5'
29753 5' -55.1 NC_006273.1 + 186196 0.7 0.846848
Target:  5'- cGUCUugGUGGACA-CUUUCgGC-GUCg -3'
miRNA:   3'- -UAGAugCACCUGUcGAAGGgCGuCAG- -5'
29753 5' -55.1 NC_006273.1 + 25359 0.7 0.842055
Target:  5'- cAUCUACGUgccccccgGGAUccaagagacccggcuGGCgaCCCGCAGUCu -3'
miRNA:   3'- -UAGAUGCA--------CCUG---------------UCGaaGGGCGUCAG- -5'
29753 5' -55.1 NC_006273.1 + 13931 0.71 0.768617
Target:  5'- cAUCcACuUGGAgAGC-UCCCGCGGUCc -3'
miRNA:   3'- -UAGaUGcACCUgUCGaAGGGCGUCAG- -5'
29753 5' -55.1 NC_006273.1 + 30663 0.71 0.759212
Target:  5'- ---cGCGccGGGCGGCUUCCUGCGGcCg -3'
miRNA:   3'- uagaUGCa-CCUGUCGAAGGGCGUCaG- -5'
29753 5' -55.1 NC_006273.1 + 94144 0.74 0.640291
Target:  5'- -gCUGCGUGGugAGCcggUgCUGCGGUCc -3'
miRNA:   3'- uaGAUGCACCugUCGa--AgGGCGUCAG- -5'
29753 5' -55.1 NC_006273.1 + 154223 0.74 0.589624
Target:  5'- -cCUACGUGGACcGCUUCgUGCGGcCg -3'
miRNA:   3'- uaGAUGCACCUGuCGAAGgGCGUCaG- -5'
29753 5' -55.1 NC_006273.1 + 129186 0.79 0.376337
Target:  5'- cUgUACGUGGaACAGCauuuUUCCCGUAGUCa -3'
miRNA:   3'- uAgAUGCACC-UGUCG----AAGGGCGUCAG- -5'
29753 5' -55.1 NC_006273.1 + 116422 0.82 0.249128
Target:  5'- gGUCUACGUGGGCGGCUUucucgCCCGCuacgaccAGUCu -3'
miRNA:   3'- -UAGAUGCACCUGUCGAA-----GGGCG-------UCAG- -5'
29753 5' -55.1 NC_006273.1 + 192936 1.08 0.005241
Target:  5'- cAUCUACGUGGACAGCUUCCCGCAGUCg -3'
miRNA:   3'- -UAGAUGCACCUGUCGAAGGGCGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.