Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29753 | 5' | -55.1 | NC_006273.1 | + | 192936 | 1.08 | 0.005241 |
Target: 5'- cAUCUACGUGGACAGCUUCCCGCAGUCg -3' miRNA: 3'- -UAGAUGCACCUGUCGAAGGGCGUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 116422 | 0.82 | 0.249128 |
Target: 5'- gGUCUACGUGGGCGGCUUucucgCCCGCuacgaccAGUCu -3' miRNA: 3'- -UAGAUGCACCUGUCGAA-----GGGCG-------UCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 129186 | 0.79 | 0.376337 |
Target: 5'- cUgUACGUGGaACAGCauuuUUCCCGUAGUCa -3' miRNA: 3'- uAgAUGCACC-UGUCG----AAGGGCGUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 154223 | 0.74 | 0.589624 |
Target: 5'- -cCUACGUGGACcGCUUCgUGCGGcCg -3' miRNA: 3'- uaGAUGCACCUGuCGAAGgGCGUCaG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 94144 | 0.74 | 0.640291 |
Target: 5'- -gCUGCGUGGugAGCcggUgCUGCGGUCc -3' miRNA: 3'- uaGAUGCACCugUCGa--AgGGCGUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 30663 | 0.71 | 0.759212 |
Target: 5'- ---cGCGccGGGCGGCUUCCUGCGGcCg -3' miRNA: 3'- uagaUGCa-CCUGUCGAAGGGCGUCaG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 13931 | 0.71 | 0.768617 |
Target: 5'- cAUCcACuUGGAgAGC-UCCCGCGGUCc -3' miRNA: 3'- -UAGaUGcACCUgUCGaAGGGCGUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 25359 | 0.7 | 0.842055 |
Target: 5'- cAUCUACGUgccccccgGGAUccaagagacccggcuGGCgaCCCGCAGUCu -3' miRNA: 3'- -UAGAUGCA--------CCUG---------------UCGaaGGGCGUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 186196 | 0.7 | 0.846848 |
Target: 5'- cGUCUugGUGGACA-CUUUCgGC-GUCg -3' miRNA: 3'- -UAGAugCACCUGUcGAAGGgCGuCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 206131 | 0.69 | 0.869746 |
Target: 5'- uGUCgGCGUgggcacGGACAGgUUCCCGCgcagGGUCc -3' miRNA: 3'- -UAGaUGCA------CCUGUCgAAGGGCG----UCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 105445 | 0.67 | 0.936782 |
Target: 5'- ---aACGUgguaGGACAGCgcgcgCCCGgCGGUCa -3' miRNA: 3'- uagaUGCA----CCUGUCGaa---GGGC-GUCAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 188690 | 0.67 | 0.936782 |
Target: 5'- -gCUGCGUGcGCAGg-UCCCGCAauacGUCg -3' miRNA: 3'- uaGAUGCACcUGUCgaAGGGCGU----CAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 215031 | 0.66 | 0.950187 |
Target: 5'- gGUCcgcCGguguugGGACcGCUUCCCGCGGg- -3' miRNA: 3'- -UAGau-GCa-----CCUGuCGAAGGGCGUCag -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 149691 | 0.66 | 0.957983 |
Target: 5'- -aCUugGUGGAgcGCgUUCCCGCAuccacaacGUCa -3' miRNA: 3'- uaGAugCACCUguCG-AAGGGCGU--------CAG- -5' |
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29753 | 5' | -55.1 | NC_006273.1 | + | 113610 | 0.66 | 0.96804 |
Target: 5'- cAUCgggcCGUGGuACGcGCgcgacCCCGCGGUCa -3' miRNA: 3'- -UAGau--GCACC-UGU-CGaa---GGGCGUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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