miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29759 5' -55 NC_006273.1 + 1671 0.65 0.970055
Target:  5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3'
miRNA:   3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 56809 0.65 0.970055
Target:  5'- gGGCcgucGUCGUGCaGACCgCCGGCAu- -3'
miRNA:   3'- -UCGauuaCGGCACG-CUGG-GGCUGUuu -5'
29759 5' -55 NC_006273.1 + 196564 0.65 0.970055
Target:  5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3'
miRNA:   3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 22005 0.66 0.96705
Target:  5'- gGGCUGcugGCCGcgggaucgGUGGCCCUGACc-- -3'
miRNA:   3'- -UCGAUua-CGGCa-------CGCUGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 48580 0.66 0.96705
Target:  5'- gGGCggcAUGCCGUugGCGGCgCCGGgAAu -3'
miRNA:   3'- -UCGau-UACGGCA--CGCUGgGGCUgUUu -5'
29759 5' -55 NC_006273.1 + 18414 0.66 0.966739
Target:  5'- cGCUGcgGCCGUGgccaagaCGGCCCgCGAa--- -3'
miRNA:   3'- uCGAUuaCGGCAC-------GCUGGG-GCUguuu -5'
29759 5' -55 NC_006273.1 + 159122 0.66 0.960413
Target:  5'- cGCUGGUGCCaccgccguuGUGaCGGCCCgGAUc-- -3'
miRNA:   3'- uCGAUUACGG---------CAC-GCUGGGgCUGuuu -5'
29759 5' -55 NC_006273.1 + 38334 0.66 0.960413
Target:  5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3'
miRNA:   3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 131370 0.66 0.960413
Target:  5'- cAGCUucUGCaCGcGCGACCUgGGCAc- -3'
miRNA:   3'- -UCGAuuACG-GCaCGCUGGGgCUGUuu -5'
29759 5' -55 NC_006273.1 + 233227 0.66 0.960413
Target:  5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3'
miRNA:   3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 201148 0.66 0.952907
Target:  5'- cGCUGccUGCCG-GCGGCCCUGugccGCGGGu -3'
miRNA:   3'- uCGAUu-ACGGCaCGCUGGGGC----UGUUU- -5'
29759 5' -55 NC_006273.1 + 65419 0.66 0.952907
Target:  5'- cGCaccUGCCGUGuCGACgCCGACc-- -3'
miRNA:   3'- uCGauuACGGCAC-GCUGgGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 71081 0.67 0.948816
Target:  5'- uGUUcAUGCUGUGgGGCgCCGACGc- -3'
miRNA:   3'- uCGAuUACGGCACgCUGgGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 123271 0.67 0.944497
Target:  5'- cGGCUGGUGaguCCacGCGGCCCCGAgAu- -3'
miRNA:   3'- -UCGAUUAC---GGcaCGCUGGGGCUgUuu -5'
29759 5' -55 NC_006273.1 + 105494 0.67 0.944497
Target:  5'- cGUcGGUGCaCGUagagcaGCGGCCCgCGACAAAa -3'
miRNA:   3'- uCGaUUACG-GCA------CGCUGGG-GCUGUUU- -5'
29759 5' -55 NC_006273.1 + 38601 0.67 0.944497
Target:  5'- cGcCUGcgGCUGUGCcgccacaugGACCCCGAgCAGGa -3'
miRNA:   3'- uC-GAUuaCGGCACG---------CUGGGGCU-GUUU- -5'
29759 5' -55 NC_006273.1 + 130866 0.67 0.939946
Target:  5'- aAGCUGucacUGCCGcGCGACCCgGcCGc- -3'
miRNA:   3'- -UCGAUu---ACGGCaCGCUGGGgCuGUuu -5'
29759 5' -55 NC_006273.1 + 143946 0.67 0.935161
Target:  5'- cGCUAGcGCCgGUGgGGCCCgCGGCu-- -3'
miRNA:   3'- uCGAUUaCGG-CACgCUGGG-GCUGuuu -5'
29759 5' -55 NC_006273.1 + 189198 0.68 0.913666
Target:  5'- cGGCcGAUGCUGgucgGCGuuCCCGGCGu- -3'
miRNA:   3'- -UCGaUUACGGCa---CGCugGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 173810 0.68 0.913666
Target:  5'- uGGCcaaAcgGCCGcGCGACCcggCCGACGAGg -3'
miRNA:   3'- -UCGa--UuaCGGCaCGCUGG---GGCUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.