Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29759 | 5' | -55 | NC_006273.1 | + | 1671 | 0.65 | 0.970055 |
Target: 5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3' miRNA: 3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 56809 | 0.65 | 0.970055 |
Target: 5'- gGGCcgucGUCGUGCaGACCgCCGGCAu- -3' miRNA: 3'- -UCGauuaCGGCACG-CUGG-GGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 196564 | 0.65 | 0.970055 |
Target: 5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3' miRNA: 3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 22005 | 0.66 | 0.96705 |
Target: 5'- gGGCUGcugGCCGcgggaucgGUGGCCCUGACc-- -3' miRNA: 3'- -UCGAUua-CGGCa-------CGCUGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 48580 | 0.66 | 0.96705 |
Target: 5'- gGGCggcAUGCCGUugGCGGCgCCGGgAAu -3' miRNA: 3'- -UCGau-UACGGCA--CGCUGgGGCUgUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 18414 | 0.66 | 0.966739 |
Target: 5'- cGCUGcgGCCGUGgccaagaCGGCCCgCGAa--- -3' miRNA: 3'- uCGAUuaCGGCAC-------GCUGGG-GCUguuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 159122 | 0.66 | 0.960413 |
Target: 5'- cGCUGGUGCCaccgccguuGUGaCGGCCCgGAUc-- -3' miRNA: 3'- uCGAUUACGG---------CAC-GCUGGGgCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38334 | 0.66 | 0.960413 |
Target: 5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3' miRNA: 3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 131370 | 0.66 | 0.960413 |
Target: 5'- cAGCUucUGCaCGcGCGACCUgGGCAc- -3' miRNA: 3'- -UCGAuuACG-GCaCGCUGGGgCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 233227 | 0.66 | 0.960413 |
Target: 5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3' miRNA: 3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 201148 | 0.66 | 0.952907 |
Target: 5'- cGCUGccUGCCG-GCGGCCCUGugccGCGGGu -3' miRNA: 3'- uCGAUu-ACGGCaCGCUGGGGC----UGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 65419 | 0.66 | 0.952907 |
Target: 5'- cGCaccUGCCGUGuCGACgCCGACc-- -3' miRNA: 3'- uCGauuACGGCAC-GCUGgGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 71081 | 0.67 | 0.948816 |
Target: 5'- uGUUcAUGCUGUGgGGCgCCGACGc- -3' miRNA: 3'- uCGAuUACGGCACgCUGgGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 123271 | 0.67 | 0.944497 |
Target: 5'- cGGCUGGUGaguCCacGCGGCCCCGAgAu- -3' miRNA: 3'- -UCGAUUAC---GGcaCGCUGGGGCUgUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 105494 | 0.67 | 0.944497 |
Target: 5'- cGUcGGUGCaCGUagagcaGCGGCCCgCGACAAAa -3' miRNA: 3'- uCGaUUACG-GCA------CGCUGGG-GCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38601 | 0.67 | 0.944497 |
Target: 5'- cGcCUGcgGCUGUGCcgccacaugGACCCCGAgCAGGa -3' miRNA: 3'- uC-GAUuaCGGCACG---------CUGGGGCU-GUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 130866 | 0.67 | 0.939946 |
Target: 5'- aAGCUGucacUGCCGcGCGACCCgGcCGc- -3' miRNA: 3'- -UCGAUu---ACGGCaCGCUGGGgCuGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 143946 | 0.67 | 0.935161 |
Target: 5'- cGCUAGcGCCgGUGgGGCCCgCGGCu-- -3' miRNA: 3'- uCGAUUaCGG-CACgCUGGG-GCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 189198 | 0.68 | 0.913666 |
Target: 5'- cGGCcGAUGCUGgucgGCGuuCCCGGCGu- -3' miRNA: 3'- -UCGaUUACGGCa---CGCugGGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 173810 | 0.68 | 0.913666 |
Target: 5'- uGGCcaaAcgGCCGcGCGACCcggCCGACGAGg -3' miRNA: 3'- -UCGa--UuaCGGCaCGCUGG---GGCUGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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